Category:LBS/Search: Difference between revisions
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{{#includejs:LBSSearch.js}} | {{#includejs:LBSSearch.js}} | ||
{{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}} | <!---{{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}}---> | ||
{{#includejs:GlycosphingolipidMassCalculator.js}} | {{#includejs:GlycosphingolipidMassCalculator.js}} | ||
=={{Bilingual|構造から探す|Search from Structure}}== | =={{Bilingual|構造から探す|Search from Structure}}== | ||
<ul> | <ul> | ||
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<li> Search from the non-reducing end pattern (click "Show" to expand the table) | <li> Search from the non-reducing end pattern (click "Show" to expand the table) | ||
<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em"> | <table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em"> | ||
<tr><th>Name</th><th width="300px">Structure</th></tr> | <tr><th>Name</th><th width="300px">Structure</th></tr> | ||
<tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group A]]</td><td>{{LBS/FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr> | <tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group A]]</td><td>{{LBS/FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr> | ||
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group B]]</td> <td>{{LBS/FormatSugar|Gala1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr> | <tr><td>[[Volatile:ListMol/LBS|1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group B]]</td> <td>{{LBS/FormatSugar|Gala1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr> | ||
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</table> | </table> | ||
<li> Search from the | <li> Search from the sugar sequence {{#formtag:fieldset|| | ||
<table> | <table> | ||
<tr> | <tr> | ||
<td>{{#formtag:select|name="nre" id="nre" |<option value=" | <td>{{#formtag:select|name="nre" id="nre" |<option value="^">NR end</option><option value=".*" selected="yes">any</option>}}</td> | ||
<td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">none</option>}}</td> | <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">none</option>}}</td> | ||
<td>-</td> | <td>-</td> | ||
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<td>{{#formtag:select|name="re" id="re" |<option value="((Cer)|(Sph))">Cer/Sph</option><option value=".+">any</option>}}</td> | <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)|(Sph))">Cer/Sph</option><option value=".+">any</option>}}</td> | ||
<td> </td> | <td> </td> | ||
<td>{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="true" id=" | <td>{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="true" id="sequence_search_button"}}</td> | ||
<td>{{#persist:ListAllChains|List allchains|ListAllChains|0|dummy|;}}</td> | <td>{{#persist:ListAllChains|List allchains|ListAllChains|0|dummy|;}}</td> | ||
</tr> | </tr> | ||
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}} | }} | ||
<div id="PolySeqResult" style="height: 400px; overflow: scroll; resize: vertical; display: none"></div> | <div id="PolySeqResult" style="height: 400px; overflow: scroll; resize: vertical; display: none"></div> | ||
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{{#formtag:legend||Advanced search}} | {{#formtag:legend||Advanced search}} | ||
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}} | {{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}} | ||
{{#formtag:input|type="button" id="advanced_search_button" value="SEARCH"}}<br /> | {{#formtag:input|type="button" disabled="true" id="advanced_search_button" value="SEARCH"}}<br /> | ||
{{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}} | {{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}} | ||
}} | }} | ||
<div id="loading">[[File:loading.gif]] loading...</div> | |||
<div id="AdvResult" style="height: 400px; overflow: scroll; display: none"></div> | |||
</ul> | </ul> | ||
<!--- | |||
==All Polysaccharide Sequences== | ==All Polysaccharide Sequences== | ||
{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}} | {{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}} | ||
---> | |||
=={{Bilingual|質量から探す|Search From Mass}}== | =={{Bilingual|質量から探す|Search From Mass}}== | ||
<!--- | |||
{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="yes" onclick="calculateF2M()"}} | |||
{| class="wikitable" style="float:right;" | {| class="wikitable" style="float:right;" | ||
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}} | }} | ||
|} | |} | ||
{{#formtag:fieldset|| | {{#formtag:fieldset|| | ||
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}} | }} | ||
<table> | <table> | ||
<tr> | <tr> | ||
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---> | ---> | ||
{ | {| | ||
| | |||
<!-- Glycosphingolipid Mass Calculator --> | <!-- Glycosphingolipid Mass Calculator --> | ||
<table class="wikitable | <table class="wikitable" border=1 cellspacing=0 cellpadding=5 style="font-size: small; background-color: white; border-collapse: collapse"> | ||
<tr><th colspan="6" style="text-align: center; font-weight: 600">Glycosphingolipid Mass Calculator for MS Analysis</th></tr> | <tr><th colspan="6" style="text-align: center; font-weight: 600">Glycosphingolipid Mass Calculator for MS Analysis</th></tr> | ||
<tr> | <tr> | ||
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</tr> | </tr> | ||
</table> | </table> | ||
|valign=top| | |||
<big>Examples</big> | |||
<table> | |||
<tr><td>'''Ganglioside GM1 of FA 18:0, LCB d20:1''' ([[LBSG2005105]]) {{#formtag:input|type="button" value="Display" id="ex_ganglioside"}} | |||
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc] | |||
<li>Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group] | |||
<li>Long chain base [20 carbons, 1 unsaturation, 2 hydroxy groups] | |||
</ul> | |||
</td></tr> | |||
<tr><td>'''Sulfatide of FA 24:1, LCB d18:1''' ([[LBSG1001005]]) {{#formtag:input|type="button" value="Display" id="ex_sulfatide"}} | |||
<ul><li>Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc] | |||
<li>Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group] | |||
<li>Long chain base [18 carbons, 1 unsaturation, 2 hydroxy groups] | |||
<li>Modification [Sulfate: 1] | |||
</ul> | |||
</td></tr> | |||
<tr><td>'''Lactotetraosylceramide of FA 16:0, LCB t18:0''' ([[LBSG3B04001]]) {{#formtag:input|type="button" value="Display" id="ex_lactotetraosylceramide"}} | |||
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc] | |||
<li>Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group] | |||
<li>Long chain base [18 carbons, 0 unsaturation, 3 hydroxy groups] | |||
</ul> | |||
</td></tr> | |||
</table> | |||
|} | |||
<!--- | |||
{{#formtag:fieldset|| | {{#formtag:fieldset|| | ||
{{#formtag:legend||Display setting}} | {{#formtag:legend||Display setting}} | ||
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</table> | </table> | ||
}} | }} | ||
---> |
Revision as of 04:07, 27 August 2018
{{#includejs:LBSSearch.js}} {{#includejs:GlycosphingolipidMassCalculator.js}}
Search from Structure
- Search from Sphingolipid Major Series
- Search from Specific Sugars
- Search from the non-reducing end pattern (click "Show" to expand the table)
- Search from the sugar sequence
Search From Mass
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Examples
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