Category:LBS/Search: Difference between revisions

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<!---{{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}}--->
<!---{{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}}--->
{{#includejs:GlycosphingolipidMassCalculator.js}}
{{#includejs:GlycosphingolipidMassCalculator.js}}
{{#includejs:AdvancedLBSSearch.js}}
=={{Bilingual|構造から探す|Search from Structure}}==
=={{Bilingual|構造から探す|Search from Structure}}==
<ul>
<ul>
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</table>
</table>


<li> Search from the polysaccharide sequence {{#formtag:fieldset||
<li> Search from the sugar sequence {{#formtag:fieldset||
<table>
<table>
  <tr>
  <tr>
   <td>{{#formtag:select|name="nre" id="nre" |<option value="([]|\()">NR end</option><option value=".*" selected="yes">any</option>}}</td>
   <td>{{#formtag:select|name="nre" id="nre" |<option value="^">NR end</option><option value=".*" selected="yes">any</option>}}</td>
   <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">none</option>}}</td>
   <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">none</option>}}</td>
   <td>-</td>
   <td>-</td>
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   <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)|(Sph))">Cer/Sph</option><option value=".+">any</option>}}</td>
   <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)|(Sph))">Cer/Sph</option><option value=".+">any</option>}}</td>
   <td>&nbsp;</td>
   <td>&nbsp;</td>
   <td>{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="true" id="mainchain"}}</td>
   <td>{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="true" id="sequence_search_button"}}</td>
   <td>{{#persist:ListAllChains|List allchains|ListAllChains|0|dummy|;}}</td>
   <td>{{#persist:ListAllChains|List allchains|ListAllChains|0|dummy|;}}</td>
  </tr>
  </tr>
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}}
}}


<div id="loading">[[File:loading.gif]] loading...</div>
<div id="PolySeqResult" style="height: 400px; overflow: scroll; resize: vertical; display: none"></div>
<div id="PolySeqResult" style="height: 400px; overflow: scroll; resize: vertical; display: none"></div>


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{{#formtag:legend||Advanced search}}
{{#formtag:legend||Advanced search}}
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
{{#formtag:input|type="button" id="advanced_search_button" value="SEARCH"}}<br />
{{#formtag:input|type="button" disabled="true" id="advanced_search_button" value="SEARCH"}}<br />
{{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}}
{{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}}
}}
}}
<div id="loading">[[File:loading.gif]] loading...</div>
<div id="AdvResult" style="height: 400px; overflow: scroll; display: none"></div>
</ul>
</ul>


<!---
==All Polysaccharide Sequences==
==All Polysaccharide Sequences==
{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}}
{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}}
 
--->


=={{Bilingual|質量から探す|Search From Mass}}==
=={{Bilingual|質量から探す|Search From Mass}}==
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<big>Examples</big>
<big>Examples</big>
<table>
<table>
<tr><td>'''Ganglioside GM1 of FA 18:0, LCB d20:1''' ([[LBSG2005105]])
<tr><td>'''Ganglioside GM1 of FA 18:0, LCB d20:1''' ([[LBSG2005105]]) {{#formtag:input|type="button" value="Display" id="ex_ganglioside"}}
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
<li>Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
<li>Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
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</td></tr>
</td></tr>


<tr><td>'''Sulfatide of FA 24:1, LCB d18:1''' ([[LBSG1001005]])
<tr><td>'''Sulfatide of FA 24:1, LCB d18:1''' ([[LBSG1001005]]) {{#formtag:input|type="button" value="Display" id="ex_sulfatide"}}
<ul><li>Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
<ul><li>Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
<li>Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
<li>Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
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</td></tr>
</td></tr>


<tr><td>'''Lactotetraosylceramide of FA 16:0, LCB t18:0''' ([[LBSG3B04001]])
<tr><td>'''Lactotetraosylceramide of FA 16:0, LCB t18:0''' ([[LBSG3B04001]]) {{#formtag:input|type="button" value="Display" id="ex_lactotetraosylceramide"}}
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
<li>Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
<li>Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]

Revision as of 04:07, 27 August 2018

{{#includejs:LBSSearch.js}} {{#includejs:GlycosphingolipidMassCalculator.js}}

Search from Structure


Search From Mass

Glycosphingolipid Mass Calculator for MS Analysis
Exact MassNominal MassFormula
Carbohydrates Hexose
 HexNAc
 NeuAc
 NeuGc
Fucose
 HexA
Fatty Acids Carbon No.
 Unsaturation
 Hydroxy group
 Polarity
Long Chain Bases Carbon No.
 Unsaturation
 Hydroxy group
Adduct Ions Na
 K
 Ammonium
Modification Sulfate
 Phosphate
 Methyl
 Acetyl
Lactone

Examples

Ganglioside GM1 of FA 18:0, LCB d20:1 (LBSG2005105)
  • Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
  • Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
  • Long chain base [20 carbons, 1 unsaturation, 2 hydroxy groups]
Sulfatide of FA 24:1, LCB d18:1 (LBSG1001005)
  • Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
  • Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
  • Long chain base [18 carbons, 1 unsaturation, 2 hydroxy groups]
  • Modification [Sulfate: 1]
Lactotetraosylceramide of FA 16:0, LCB t18:0 (LBSG3B04001)
  • Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
  • Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
  • Long chain base [18 carbons, 0 unsaturation, 3 hydroxy groups]


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