Category:LBS/Search: Difference between revisions
mNo edit summary
 
(72 intermediate revisions by 4 users not shown)
Line 1: Line 1:
==Search Page==
=={{Bilingual|構造から探す|Search from Structure}}==
<ul>
<li> [[:Category:LBS#SphingolipidClass|Search from Sphingolipid Major Series]]


{{#formtag:fieldset||
<li> [[:Category:LBS#SphingolipidSugar|Search from Specific Sugars]]
{{#formtag:legend||Sphingolipid Major Series}}
 
<table>
<li> Search from the non-reducing end pattern (click "Show" to expand the table)
  <tr>
 
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Gala</label></td>
<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Spirometo</label></td>
<tr><th>Name</th><th width="300px">Structure</th></tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Ganglio</label></td>
<tr><td>{{#volatile:ListMol/LBS|Blood group A|Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3}}</td><td>{{#invoke:LBS|FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Isoganglio</label></td>
  <tr><td>{{#volatile:ListMol/LBS|Blood group B|Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3}}</td>  <td>{{#invoke:LBS|FormatSugar|Gala1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Lactoganglio</label></td>
<tr><td>{{#volatile:ListMol/LBS|Blood group H|Structure=Fuca1-2Galb1-3GlcNAcb1-3}}</td>             <td>{{#invoke:LBS|FormatSugar|Fuca1-2Galb1-3GlcNAcb1-3-R}}</td></tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Ganglio a-series</label></td>
 
</tr>
<tr><td>{{#volatile:ListMol/LBS|Lewis <sup>a</sup>|Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3}}</td>                <td>{{#invoke:LBS|FormatSugar|Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
  <tr>
<tr><td>{{#volatile:ListMol/LBS|Lewis <sup>b</sup>|Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3}}</td>        <td>{{#invoke:LBS|FormatSugar|Fuca1-2Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">SM/CPE/CAEP</label></td>
<tr><td>{{#volatile:ListMol/LBS|sialyl-Lewis<sup>a</sup>|Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3}}</td> <td>{{#invoke:LBS|FormatSugar|NeuAca2-3Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Spirometo</label></td>
 
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC GlcN</label></td>
<tr><td>{{#volatile:ListMol/LBS|Lewis <sup>x</sup>, SSEA-1|Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3}}</td>       <td>{{#invoke:LBS|FormatSugar|Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC GlcA</label></td>
  <tr><td>{{#volatile:ListMol/LBS|Lewis <sup>y</sup>|Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3}}</td>         <td>{{#invoke:LBS|FormatSugar|Fuca1-2Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC Man</label></td>
<tr><td>{{#volatile:ListMol/LBS|sialyl-Lewis <sup>x</sup>|Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3}}</td><td>{{#invoke:LBS|FormatSugar|NeuAca2-3Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Others</label></td>
 
</tr>
<tr><td>{{#volatile:ListMol/LBS|Forssman antigen|Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1}}</td>       <td>{{#invoke:LBS|FormatSugar|GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
 
<tr><td>{{#volatile:ListMol/LBS|P antigen|Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1}}</td>                       <td>{{#invoke:LBS|FormatSugar|GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
</table>
</table>
}}


{{#formtag:fieldset||
<li> Search from the sugar sequence [[Persist:ListAllChains|(List allchains)]] {{#formtag:fieldset||
{{#formtag:legend||Polysaccharide sequence}}
<table>
<table>
  <tr>
  <tr>
   <td>{{#formtag:select|name="4th"|<option>Galβ-3</option><option>Galβ-4</option><option>Glc1β-3</option><option>Glcβ-4</option><option>Manβ-3</option><option>Manβ-4</option><option>GalNAcβ-3</option><option>GalNAcβ-4</option><option>GlcNAcβ-3</option><option>GlcNAcβ-4</option><option>NeuAcα2-8</option><option selected>NeuAcα2-6</option><option>Ins-P-</option><option>other</option>}}</td>
   <td>{{#formtag:select|name="nre" id="nre" |<option value="^">NR end</option><option value=".*" selected="yes">any</option>}}</td>
  <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">none</option>}}</td>
   <td>-</td>
   <td>-</td>
   <td>{{#formtag:select|name="3rd"|<option>Galβ-3</option><option>Galβ-4</option><option>Glc1β-3</option><option>Glcβ-4</option><option>Manβ-3</option><option>Manβ-4</option><option>GalNAcβ-3</option><option selected>GalNAcβ-4</option><option>GlcNAcβ-3</option><option>GlcNAcβ-4</option><option>NeuAcα2-8</option><option>NeuAcα2-6</option><option>Ins-P-</option><option>other</option>}}</td>
   <td>{{#formtag:select|name="3th" id="3th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-." selected="yes">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">none</option>}}</td>
 
   <td>-</td>
   <td>-</td>
   <td>{{#formtag:select|name="2nd"|<option>Galβ-3</option><option selected>Galβ-4</option><option>Glc1β-3</option><option>Glcβ-4</option><option>Manβ-3</option><option>Manβ-4</option><option>GalNAcβ-3</option><option>GalNAcβ-4</option><option>GlcNAcβ-3</option><option>GlcNAcβ-4</option><option>NeuAcα2-8</option><option>NeuAcα2-6</option><option>Ins-P-</option><option>other</option>}}</td>
   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-." selected="yes">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">none</option>}}</td>
<td>-</td>
  <td>{{#formtag:select|name="1st" id="1st"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-" selected="yes">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-">HexA</option><option value="[^-]*Fuc[^-]*-">Fucose</option><option value="[^-]*NeuAc[^-]*-">NeuAc</option><option value="[^-]*NeuGc[^-]*-">NeuGc</option><option value="[^-]*-">Others</option><option value="">none</option>}}</td>
   <td>-</td>
   <td>-</td>
   <td>{{#formtag:select|name="1st"|<option>Glcβ-</option><option>Galβ-</option><option>Ins-P-</option><option>other</option>}} </td>
   <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)|(Sph))">Cer/Sph</option><option value=".+">any</option>}}</td>
   <td>-Cer</td>
  <td>&nbsp;</td>
   <td>{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="true" id="sequence_search_button"}}</td>
  </tr>
  </tr>
</table>
</table>
}}
<div id="PolySeqResult" style="height: 400px; overflow: scroll; resize: vertical; display: none"></div>
{{#formtag:fieldset||
{{#formtag:legend||Advanced search}}
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
{{#formtag:input|type="button" disabled="true" id="advanced_search_button" value="SEARCH"}}<br />
{{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}}
}}
<div id="loading">[[File:loading.gif]] loading...</div>
<div id="AdvResult" style="height: 400px; overflow: scroll; display: none"></div>
</ul>
<!---
==All Polysaccharide Sequences==
{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}}
--->
=={{Bilingual|質量から探す|Search From Mass}}==
<!---
{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="yes" onclick="calculateF2M()"}}


{| class="wikitable" style="float:right;"
|
{{#formtag:fieldset|id="formula"|
{{#formtag:legend||Mass calculator}}
<table>
  <tr>
  <td style="border: none">Formula<br/>&nbsp;</td>
  <td style="border: none">{{#formtag:input|name="calc_formula" id="calc_formula" type="text" size="15" value="C6H12O6"}}{{#formtag:input|name="cals" type="button" value="calc" id="calculateF2M"}} <br/>&nbsp;&nbsp; &rarr;
  {{#formtag:input|name="calc_mass" id="calc_mass" type="text" size="15" }}</td>
  </tr>
</table>
}}
}}
|}


{{#formtag:fieldset||
{{#formtag:fieldset||
{{#formtag:legend||Mass range (polysaccharide part)}}
{{#formtag:legend||Precursor Mass (polysaccharide part only)}}
{{#formtag:input|name="prec_mass" id="prec_mass" type="text" size="10" value="500"}}
{{#formtag:legend|| &rarr; Product Masses (comma separated)}}
&nbsp;&nbsp;{{#formtag:input|name="prod_mass" id="prod_mass" type="text" size="10" value="42,72,179"}} (tolerance {{#formtag:input|name="tol_mass" id="tol_mass" type="text" size="3" value="0.1"}})
 
}}
 
<table>
<table>
  <tr>
  <tr>
Line 51: Line 100:
<td>{{#formtag:input|type="checkbox" name="none" value="none" id="none"}}<label for="none">1200-1400</label></td>
<td>{{#formtag:input|type="checkbox" name="none" value="none" id="none"}}<label for="none">1200-1400</label></td>
</table>
</table>
}}


{{#formtag:input|name="cals" type="button" value="SEARCH" onclick="calculateF2M()"}}
GM1, 中性、硫酸基のGalCerなど例をいれておく
--->
 
{|
|
<!-- Glycosphingolipid Mass Calculator -->
<table class="wikitable" border=1 cellspacing=0 cellpadding=5 style="font-size: small; background-color: white; border-collapse: collapse">
<tr><th colspan="6" style="text-align: center; font-weight: 600">Glycosphingolipid Mass Calculator for MS Analysis</th></tr>
<tr>
  <td colspan="5">
  <table style="text-align: center">
    <tr><td style="border: none"><span style="display: none">{{#formtag:select|name="cs_average" id="cs_average"|{{#formtag:option|value="false"|Exact}}{{#formtag:option|value="true"|Average}} }}</span> Exact Mass</td><td style="border: none">Nominal Mass</td><td style="border: none">Formula</td></tr>
    <tr><td style="border: none">{{#formtag:input|type="text" id="cs_mass" style="width: 12em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_nominalmass" style="width: 8em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_formula" style="width: 12em"}}</td></tr>
  </table>
  </td>
  <td style="background-color: #ffccff">{{#formtag:input|type="button" value="calculate" style="font-weight: 600; height: 3em" id="calculate_glycosphingolipid_button"}}</td>
</tr>
<tr style="background-color: #ffcccc">
  <td rowspan="2" style="background-color: #ffaaaa; font-weight: 600">Carbohydrates</td>
  <td>Hexose<br />{{#formtag:input|type="number" min="0" value="0" id="cs_hexose" style="width: 3em"}}</td>
  <td>HexNAc<br />{{#formtag:input|type="number" min="0" value="0" id="cs_hexnac" style="width: 3em"}}</td>
  <td>NeuAc<br />{{#formtag:input|type="number" min="0" value="0" id="cs_neuac" style="width: 3em"}}</td>
  <td>NeuGc<br />{{#formtag:input|type="number" min="0" value="0" id="cs_neugc" style="width: 3em"}}</td>
  <td rowspan="7" style="background-color: white; border-right: 1px solid white; border-bottom: 1px solid white"></td>
</tr>
<tr style="background-color: #ffcccc">
  <td>Fucose<br />{{#formtag:input|type="number" min="0" value="0" id="cs_fucose" style="width: 3em"}}</td>
  <td>HexA<br />{{#formtag:input|type="number" min="0" value="0" id="cs_hexua"  style="width: 3em"}}</td>
  <td></td>
  <td></td>
</tr>
<tr style="background-color: #ccffcc">
  <td style="background-color: #aaffaa; font-weight: 600">Fatty Acids</td>
  <td>Carbon No.<br />{{#formtag:input|type="number" min="0" value="0" id="cs_fa_carbonno" style="width: 3em"}}</td>
  <td>Unsaturation<br />{{#formtag:input|type="number" min="0" value="0" id="cs_fa_unsaturation" style="width: 3em"}}</td>
  <td>Hydroxy group<br />{{#formtag:input|type="number" min="0" value="0" id="cs_fa_hydroxygroup" style="width: 3em"}}</td>
  <td rowspan="3" style="background-color: #ccffff">Polarity<br />{{#formtag:select|name="cs_polarity" id="cs_polarity"|{{#formtag:option|value="NON"|NON}}{{#formtag:option|value="NEG"|NEG}}{{#formtag:option|value="POS"|POS}} }}<br /><div id="div_charge" style="display: none">Charge<br />{{#formtag:input|type="number" min="1" value="1" id="cs_charge" style="width: 3em"}}</div>
  </td>
</tr>
<tr style="background-color: #ccccff">
  <td style="background-color: #aaaaff; font-weight: 600">Long Chain Bases</td>
  <td>Carbon No.<br />{{#formtag:input|type="number" min="5" value="5" id="cs_lcb_carbonno" style="width: 3em"}}</td>
  <td>Unsaturation<br />{{#formtag:input|type="number" min="0" value="0" id="cs_lcb_unsaturation" style="width: 3em"}}</td>
  <td>Hydroxy group<br />{{#formtag:input|type="number" min="2" value="2" id="cs_lcb_hydroxygroup" style="width: 3em"}}</td>
</tr>
<tr style="background-color: #ccccaa">
  <td style="background-color: #aaaa88; font-weight: 600">Adduct Ions</td>
  <td>Na<br />{{#formtag:input|type="number" min="0" value="0" id="cs_na" style="width: 3em"}}</td>
  <td>K<br />{{#formtag:input|type="number" min="0" value="0" id="cs_k" style="width: 3em"}}</td>
  <td>Ammonium<br />{{#formtag:input|type="number" min="0" value="0" id="cs_nh4" style="width: 3em"}}</td>
</tr>
<tr style="background-color: #cccccc">
  <td rowspan="2" style="background-color: #aaaaaa; font-weight: 600">Modification</td>
  <td>Sulfate<br />{{#formtag:input|type="number" min="0" value="0" id="cs_sulfate" style="width: 3em"}}</td>
  <td>Phosphate<br />{{#formtag:input|type="number" min="0" value="0" id="cs_phosphate" style="width: 3em"}}</td>
  <td>Methyl<br />{{#formtag:input|type="number" min="-99" value="0" id="cs_methyl" style="width: 3em"}}</td>
  <td>Acetyl<br />{{#formtag:input|type="number" min="-99" value="0" id="cs_acetyl" style="width: 3em"}}</td>
</tr>
<tr style="background-color: #cccccc">
  <td>Lactone<br />{{#formtag:input|type="number" min="0" value="0" id="cs_lactone" style="width: 3em"}}</td>
  <td></td>
  <td></td>
  <td>{{#formtag:input|type="hidden" min="0" value="0" id="cs_nmethylamide" style="width: 3em"}}</td>
</tr>
</table>
 
|valign=top|
<big>Examples</big>
<table>
<tr><td>'''Ganglioside GM1 of FA 18:0, LCB d20:1''' ([[LBSG2005105]]) {{#formtag:input|type="button" value="Display" id="ex_ganglioside"}}
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
<li>Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
<li>Long chain base [20 carbons, 1 unsaturation, 2 hydroxy groups]
</ul>
</td></tr>
 
<tr><td>'''Sulfatide of FA 24:1, LCB d18:1''' ([[LBSG1001005]]) {{#formtag:input|type="button" value="Display" id="ex_sulfatide"}}
<ul><li>Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
<li>Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
<li>Long chain base [18 carbons, 1 unsaturation, 2 hydroxy groups]
<li>Modification [Sulfate: 1]
</ul>
</td></tr>


<hr/>
<tr><td>'''Lactotetraosylceramide of FA 16:0, LCB t18:0''' ([[LBSG3B04001]]) {{#formtag:input|type="button" value="Display" id="ex_lactotetraosylceramide"}}
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
<li>Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
<li>Long chain base [18 carbons, 0 unsaturation, 3 hydroxy groups]
</ul>
</td></tr>


{{#formtag:fieldset|id="formula"|
</table>
{{#formtag:legend||Mass calculator}}
|}
<table>
  <tr>
  <td>Formula</td>
  <td>{{#formtag:input|name="calc_formula" id="calc_formula" type="text" placeholder="C6H12O6"}} {{#formtag:input|name="cals" type="button" value="calc" onclick="calculateF2M()"}}</td>
  <td>&rarr;</td>
  <td>{{#formtag:input|name="calc_mass" id="calc_mass" type="text"}}</td>
  </tr>
</table>
}}


<!---
{{#formtag:fieldset||
{{#formtag:fieldset||
{{#formtag:legend||Display setting}}
{{#formtag:legend||Display setting}}
Line 80: Line 207:
</table>
</table>
}}
}}
--->

Latest revision as of 04:25, 25 January 2023

Search from Structure

  • Search from Sphingolipid Major Series
  • Search from Specific Sugars
  • Search from the non-reducing end pattern (click "Show" to expand the table)
  • Search from the sugar sequence (List allchains)
    - - - -  

    Advanced search

    Loading.gif loading...


Search From Mass

Glycosphingolipid Mass Calculator for MS Analysis
Exact MassNominal MassFormula
Carbohydrates Hexose
 HexNAc
 NeuAc
 NeuGc
Fucose
 HexA
Fatty Acids Carbon No.
 Unsaturation
 Hydroxy group
 Polarity
Long Chain Bases Carbon No.
 Unsaturation
 Hydroxy group
Adduct Ions Na
 K
 Ammonium
Modification Sulfate
 Phosphate
 Methyl
 Acetyl
Lactone

Examples

Ganglioside GM1 of FA 18:0, LCB d20:1 (LBSG2005105)
  • Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
  • Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
  • Long chain base [20 carbons, 1 unsaturation, 2 hydroxy groups]
Sulfatide of FA 24:1, LCB d18:1 (LBSG1001005)
  • Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
  • Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
  • Long chain base [18 carbons, 1 unsaturation, 2 hydroxy groups]
  • Modification [Sulfate: 1]
Lactotetraosylceramide of FA 16:0, LCB t18:0 (LBSG3B04001)
  • Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
  • Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
  • Long chain base [18 carbons, 0 unsaturation, 3 hydroxy groups]


This category currently contains no pages or media.

Retrieved from "http://lipidbank.jp/mediawiki/index.php?title=Category:LBS/Search&oldid=116988"