Difference between revisions of "Category:LBS/Search"

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m ({{Bilingual|構造から探す|Search from Structure}})
 
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{{#includejs:LBSSearch.js}}
 
{{#includejs:LBSSearch.js}}
{{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}}
+
<!---{{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}}--->
 
{{#includejs:GlycosphingolipidMassCalculator.js}}
 
{{#includejs:GlycosphingolipidMassCalculator.js}}
{{#includejs:AdvancedLBSSearch.js}}
 
 
=={{Bilingual|構造から探す|Search from Structure}}==
 
=={{Bilingual|構造から探す|Search from Structure}}==
 
<ul>
 
<ul>
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<li> Search from the non-reducing end pattern (click "Show" to expand the table)
 
<li> Search from the non-reducing end pattern (click "Show" to expand the table)
 +
 
<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
 
<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
 
  <tr><th>Name</th><th width="300px">Structure</th></tr>
 
  <tr><th>Name</th><th width="300px">Structure</th></tr>
 
 
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group A]]</td><td>{{LBS/FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
 
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group A]]</td><td>{{LBS/FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
 
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group B]]</td>  <td>{{LBS/FormatSugar|Gala1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
 
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group B]]</td>  <td>{{LBS/FormatSugar|Gala1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
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</table>
 
</table>
  
<li> Search from the polysaccharide sequence {{#formtag:fieldset||
+
<li> Search from the sugar sequence {{#formtag:fieldset||
 
<table>
 
<table>
 
  <tr>
 
  <tr>
   <td>{{#formtag:select|name="nre" id="nre" |<option value="([]~\()">NR end</option><option value=".*" selected="yes">any</option>}}</td>
+
   <td>{{#formtag:select|name="nre" id="nre" |<option value="^">NR end</option><option value=".*" selected="yes">any</option>}}</td>
   <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)~(Gal)~(Man)~(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)~(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">none</option>}}</td>
+
   <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">none</option>}}</td>
 
   <td>-</td>
 
   <td>-</td>
   <td>{{#formtag:select|name="3th" id="3th"|<option value="((Glc)~(Gal)~(Man)~(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)~(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-." selected="yes">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">none</option>}}</td>
+
   <td>{{#formtag:select|name="3th" id="3th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-." selected="yes">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">none</option>}}</td>
  
 
   <td>-</td>
 
   <td>-</td>
   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="((Glc)~(Gal)~(Man)~(Ino))[abfp0-9]*-." selected="yes">Hexose</option><option value="((GlcNAc)~(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">none</option>}}</td>
+
   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-." selected="yes">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">none</option>}}</td>
 
<td>-</td>
 
<td>-</td>
   <td>{{#formtag:select|name="1st" id="1st"|<option value="((Glc)~(Gal)~(Man)~(Ino))[abfp0-9]*-" selected="yes">Hexose</option><option value="((GlcNAc)~(GalNAc))[abfp0-9]*-">HexNAc</option><option value="((GlcA)~(GalA))[abfp0-9]*-">HexA</option><option value="[^-]*Fuc[^-]*-">Fucose</option><option value="[^-]*NeuAc[^-]*-">NeuAc</option><option value="[^-]*NeuGc[^-]*-">NeuGc</option><option value="[^-]*-">Others</option><option value="">none</option>}}</td>
+
   <td>{{#formtag:select|name="1st" id="1st"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-" selected="yes">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-">HexA</option><option value="[^-]*Fuc[^-]*-">Fucose</option><option value="[^-]*NeuAc[^-]*-">NeuAc</option><option value="[^-]*NeuGc[^-]*-">NeuGc</option><option value="[^-]*-">Others</option><option value="">none</option>}}</td>
 
   <td>-</td>
 
   <td>-</td>
   <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)~(Sph))">Cer/Sph</option><option value=".+">any</option>}}</td>
+
   <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)|(Sph))">Cer/Sph</option><option value=".+">any</option>}}</td>
 
   <td>&nbsp;</td>
 
   <td>&nbsp;</td>
   <td>{{#formtag:input|name="cals" type="button" value="SEARCH" id="mainchain"}}</td>
+
   <td>{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="true" id="sequence_search_button"}}</td>
 +
  <td>{{#persist:ListAllChains|List allchains|ListAllChains|0|dummy|;}}</td>
 
  </tr>
 
  </tr>
 
</table>
 
</table>
 
}}
 
}}
 +
 +
<div id="PolySeqResult" style="height: 400px; overflow: scroll; resize: vertical; display: none"></div>
  
 
{{#formtag:fieldset||
 
{{#formtag:fieldset||
{{#formtag:legend||Advanced keyword search}}
+
{{#formtag:legend||Advanced search}}
 
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
 
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
{{#formtag:input|type="button" id="advanced_search_button" value="SEARCH"}}<br />
+
{{#formtag:input|type="button" disabled="true" id="advanced_search_button" value="SEARCH"}}<br />
 
{{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}}
 
{{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}}
 
}}
 
}}
 +
 +
<div id="loading">[[File:loading.gif]] loading...</div>
 +
<div id="AdvResult" style="height: 400px; overflow: scroll; display: none"></div>
 
</ul>
 
</ul>
  
 +
<!---
 
==All Polysaccharide Sequences==
 
==All Polysaccharide Sequences==
 
{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}}
 
{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}}
 
+
--->
  
 
=={{Bilingual|質量から探す|Search From Mass}}==
 
=={{Bilingual|質量から探す|Search From Mass}}==
 +
<!---
 +
{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="yes" onclick="calculateF2M()"}}
  
 
{| class="wikitable" style="float:right;"
 
{| class="wikitable" style="float:right;"
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}}
 
}}
 
|}
 
|}
 +
  
 
{{#formtag:fieldset||
 
{{#formtag:fieldset||
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}}
 
}}
<!---
+
 
 
<table>
 
<table>
 
  <tr>
 
  <tr>
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--->
 
--->
  
{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="yes" onclick="calculateF2M()"}}
+
{|
 
+
|
 
<!-- Glycosphingolipid Mass Calculator -->
 
<!-- Glycosphingolipid Mass Calculator -->
<table class="wikitable collapsible collapsed" border=1 cellspacing=0 cellpadding=5 style="font-size: small; ackground-color: white; border-collapse: collapse">
+
<table class="wikitable" border=1 cellspacing=0 cellpadding=5 style="font-size: small; background-color: white; border-collapse: collapse">
 
  <tr><th colspan="6" style="text-align: center; font-weight: 600">Glycosphingolipid Mass Calculator for MS Analysis</th></tr>
 
  <tr><th colspan="6" style="text-align: center; font-weight: 600">Glycosphingolipid Mass Calculator for MS Analysis</th></tr>
 
  <tr>
 
  <tr>
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  </tr>
 
  </tr>
 
</table>
 
</table>
}}
 
  
 +
|valign=top|
 +
<big>Examples</big>
 +
<table>
 +
<tr><td>'''Ganglioside GM1 of FA 18:0, LCB d20:1''' ([[LBSG2005105]]) {{#formtag:input|type="button" value="Display" id="ex_ganglioside"}}
 +
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
 +
<li>Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
 +
<li>Long chain base [20 carbons, 1 unsaturation, 2 hydroxy groups]
 +
</ul>
 +
</td></tr>
 +
 +
<tr><td>'''Sulfatide of FA 24:1, LCB d18:1''' ([[LBSG1001005]]) {{#formtag:input|type="button" value="Display" id="ex_sulfatide"}}
 +
<ul><li>Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
 +
<li>Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
 +
<li>Long chain base [18 carbons, 1 unsaturation, 2 hydroxy groups]
 +
<li>Modification [Sulfate: 1]
 +
</ul>
 +
</td></tr>
 +
 +
<tr><td>'''Lactotetraosylceramide of FA 16:0, LCB t18:0''' ([[LBSG3B04001]]) {{#formtag:input|type="button" value="Display" id="ex_lactotetraosylceramide"}}
 +
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
 +
<li>Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
 +
<li>Long chain base [18 carbons, 0 unsaturation, 3 hydroxy groups]
 +
</ul>
 +
</td></tr>
 +
 +
</table>
 +
|}
 +
 +
<!---
 
{{#formtag:fieldset||
 
{{#formtag:fieldset||
 
{{#formtag:legend||Display setting}}
 
{{#formtag:legend||Display setting}}
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</table>
 
</table>
 
}}
 
}}
 +
--->

Latest revision as of 13:07, 27 August 2018

[edit] Search from Structure

  • Search from Sphingolipid Major Series
  • Search from Specific Sugars
  • Search from the non-reducing end pattern (click "Show" to expand the table)
  • Search from the sugar sequence
    - - - -  

    Advanced search

    Loading.gif loading...


[edit] Search From Mass

Glycosphingolipid Mass Calculator for MS Analysis
Exact MassNominal MassFormula
Carbohydrates Hexose
HexNAc
NeuAc
NeuGc
Fucose
HexA
Fatty Acids Carbon No.
Unsaturation
Hydroxy group
Polarity

Long Chain Bases Carbon No.
Unsaturation
Hydroxy group
Adduct Ions Na
K
Ammonium
Modification Sulfate
Phosphate
Methyl
Acetyl
Lactone

Examples

Ganglioside GM1 of FA 18:0, LCB d20:1 (LBSG2005105)
  • Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
  • Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
  • Long chain base [20 carbons, 1 unsaturation, 2 hydroxy groups]
Sulfatide of FA 24:1, LCB d18:1 (LBSG1001005)
  • Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
  • Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
  • Long chain base [18 carbons, 1 unsaturation, 2 hydroxy groups]
  • Modification [Sulfate: 1]
Lactotetraosylceramide of FA 16:0, LCB t18:0 (LBSG3B04001)
  • Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
  • Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
  • Long chain base [18 carbons, 0 unsaturation, 3 hydroxy groups]


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