Category:LBS/Search: Difference between revisions
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{{#includejs:LBSSearch.js}}
{{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}}
{{#includejs:GlycosphingolipidMassCalculator.js}}
{{#includejs:AdvancedLBSSearch.js}}
=={{Bilingual|構造から探す|Search from Structure}}==
=={{Bilingual|構造から探す|Search from Structure}}==
<ul>
<ul>
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<li> Search from the non-reducing end pattern (click "Show" to expand the table)
<li> Search from the non-reducing end pattern (click "Show" to expand the table)
<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
  <tr><th>Name</th><th width="300px">Structure</th></tr>
  <tr><th>Name</th><th width="300px">Structure</th></tr>
<tr><td>{{#volatile:ListMol/LBS|Blood group A|Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3}}</td><td>{{#invoke:LBS|FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
<tr><td>{{#volatile:ListMol/LBS|Blood group B|Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3}}</td>  <td>{{#invoke:LBS|FormatSugar|Gala1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
<tr><td>{{#volatile:ListMol/LBS|Blood group H|Structure=Fuca1-2Galb1-3GlcNAcb1-3}}</td>              <td>{{#invoke:LBS|FormatSugar|Fuca1-2Galb1-3GlcNAcb1-3-R}}</td></tr>


  <tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group A]]</td><td>{{LBS/FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|Lewis <sup>a</sup>|Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3}}</td>               <td>{{#invoke:LBS|FormatSugar|Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group B]]</td>   <td>{{LBS/FormatSugar|Gala1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|Lewis <sup>b</sup>|Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3}}</td>        <td>{{#invoke:LBS|FormatSugar|Fuca1-2Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-3GlcNAcb1-3|Blood group H]]</td>              <td>{{LBS/FormatSugar|Fuca1-2Galb1-3GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|sialyl-Lewis<sup>a</sup>|Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3}}</td> <td>{{#invoke:LBS|FormatSugar|NeuAca2-3Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
 
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3|Lewis <sup>a</sup>]]</td>                <td>{{LBS/FormatSugar|Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3|Lewis <sup>b</sup>]]</td>        <td>{{LBS/FormatSugar|Fuca1-2Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3|sialyl-Lewis<sup>a</sup>]]</td> <td>{{LBS/FormatSugar|NeuAca2-3Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>


  <tr><td>[[Volatile:ListMol/LBS|1=Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3|Lewis <sup>x</sup>, SSEA-1]]</td>        <td>{{LBS/FormatSugar|Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|Lewis <sup>x</sup>, SSEA-1|Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3}}</td>        <td>{{#invoke:LBS|FormatSugar|Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3|Lewis <sup>y</sup>]]</td>        <td>{{LBS/FormatSugar|Fuca1-2Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|Lewis <sup>y</sup>|Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3}}</td>        <td>{{#invoke:LBS|FormatSugar|Fuca1-2Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3|sialyl-Lewis <sup>x</sup>]]</td><td>{{LBS/FormatSugar|NeuAca2-3Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|sialyl-Lewis <sup>x</sup>|Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3}}</td><td>{{#invoke:LBS|FormatSugar|NeuAca2-3Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>


  <tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1|Forssman antigen]]</td>      <td>{{LBS/FormatSugar|GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|Forssman antigen|Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1}}</td>      <td>{{#invoke:LBS|FormatSugar|GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>


  <tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1|P antigen]]</td>                        <td>{{LBS/FormatSugar|GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|P antigen|Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1}}</td>                        <td>{{#invoke:LBS|FormatSugar|GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
</table>
</table>


<li> Search from the polysaccharide sequence {{#formtag:fieldset||
<li> Search from the sugar sequence [[Persist:ListAllChains|(List allchains)]] {{#formtag:fieldset||
<table>
<table>
  <tr>
  <tr>
   <td>{{#formtag:select|name="nre" id="nre" |<option value="([]|\()">NR end</option><option value=".*" selected="yes">any</option>}}</td>
   <td>{{#formtag:select|name="nre" id="nre" |<option value="^">NR end</option><option value=".*" selected="yes">any</option>}}</td>
   <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">none</option>}}</td>
   <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">none</option>}}</td>
   <td>-</td>
   <td>-</td>
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   <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)|(Sph))">Cer/Sph</option><option value=".+">any</option>}}</td>
   <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)|(Sph))">Cer/Sph</option><option value=".+">any</option>}}</td>
   <td>&nbsp;</td>
   <td>&nbsp;</td>
   <td>{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="true" id="mainchain"}}</td>
   <td>{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="true" id="sequence_search_button"}}</td>
  <td>{{#persist:ListAllChains|List allchains|ListAllChains|0|dummy|;}}</td>
  </tr>
  </tr>
</table>
</table>
}}
}}


<div id="loading">[[File:loading.gif]] loading...</div>
<div id="PolySeqResult" style="height: 400px; overflow: scroll; resize: vertical; display: none"></div>
<div id="PolySeqResult" style="height: 400px; overflow: scroll; resize: vertical; display: none"></div>


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{{#formtag:legend||Advanced search}}
{{#formtag:legend||Advanced search}}
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
{{#formtag:input|type="button" id="advanced_search_button" value="SEARCH"}}<br />
{{#formtag:input|type="button" disabled="true" id="advanced_search_button" value="SEARCH"}}<br />
{{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}}
{{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}}
}}
}}
<div id="loading">[[File:loading.gif]] loading...</div>
<div id="AdvResult" style="height: 400px; overflow: scroll; display: none"></div>
</ul>
</ul>


<!---
==All Polysaccharide Sequences==
==All Polysaccharide Sequences==
{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}}
{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}}
 
--->


=={{Bilingual|質量から探す|Search From Mass}}==
=={{Bilingual|質量から探す|Search From Mass}}==
<!---
<!---
{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="yes" onclick="calculateF2M()"}}
{| class="wikitable" style="float:right;"
{| class="wikitable" style="float:right;"
|
|
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GM1, 中性、硫酸基のGalCerなど例をいれておく
GM1, 中性、硫酸基のGalCerなど例をいれておく
--->
--->
{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="yes" onclick="calculateF2M()"}}


{|
{|
|
|
<!-- Glycosphingolipid Mass Calculator -->
<!-- Glycosphingolipid Mass Calculator -->
<table class="wikitable" border=1 cellspacing=0 cellpadding=5 style="font-size: small; ackground-color: white; border-collapse: collapse">
<table class="wikitable" border=1 cellspacing=0 cellpadding=5 style="font-size: small; background-color: white; border-collapse: collapse">
  <tr><th colspan="6" style="text-align: center; font-weight: 600">Glycosphingolipid Mass Calculator for MS Analysis</th></tr>
  <tr><th colspan="6" style="text-align: center; font-weight: 600">Glycosphingolipid Mass Calculator for MS Analysis</th></tr>
  <tr>
  <tr>
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</table>
</table>


|vertical-align=top|
|valign=top|
<big>Examples</big>
<big>Examples</big>
<table>
<table>
<tr><td>'''Ganglioside GM1 of FA 18:0, LCB d20:1''' ([[LBSG2005105]])
<tr><td>'''Ganglioside GM1 of FA 18:0, LCB d20:1''' ([[LBSG2005105]]) {{#formtag:input|type="button" value="Display" id="ex_ganglioside"}}
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
<li>Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
<li>Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
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</td></tr>
</td></tr>


<tr><td>'''Sulfatide of FA 24:1, LCB d18:1''' ([[LBSG1001005]])
<tr><td>'''Sulfatide of FA 24:1, LCB d18:1''' ([[LBSG1001005]]) {{#formtag:input|type="button" value="Display" id="ex_sulfatide"}}
<ul><li>Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
<ul><li>Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
<li>Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
<li>Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
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</td></tr>
</td></tr>


<tr><td>'''Lactotetraosylceramide of FA 16:0, LCB t18:0''' ([[LBSG3B04001]])
<tr><td>'''Lactotetraosylceramide of FA 16:0, LCB t18:0''' ([[LBSG3B04001]]) {{#formtag:input|type="button" value="Display" id="ex_lactotetraosylceramide"}}
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
<li>Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
<li>Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
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|}
|}


 
<!---
{{#formtag:fieldset||
{{#formtag:fieldset||
{{#formtag:legend||Display setting}}
{{#formtag:legend||Display setting}}
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</table>
</table>
}}
}}
--->

Latest revision as of 04:25, 25 January 2023

Search from Structure

  • Search from Sphingolipid Major Series
  • Search from Specific Sugars
  • Search from the non-reducing end pattern (click "Show" to expand the table)
  • Search from the sugar sequence (List allchains)
    - - - -  

    Advanced search

    Loading.gif loading...


Search From Mass

Glycosphingolipid Mass Calculator for MS Analysis
Exact MassNominal MassFormula
Carbohydrates Hexose
 HexNAc
 NeuAc
 NeuGc
Fucose
 HexA
Fatty Acids Carbon No.
 Unsaturation
 Hydroxy group
 Polarity
Long Chain Bases Carbon No.
 Unsaturation
 Hydroxy group
Adduct Ions Na
 K
 Ammonium
Modification Sulfate
 Phosphate
 Methyl
 Acetyl
Lactone

Examples

Ganglioside GM1 of FA 18:0, LCB d20:1 (LBSG2005105)
  • Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
  • Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
  • Long chain base [20 carbons, 1 unsaturation, 2 hydroxy groups]
Sulfatide of FA 24:1, LCB d18:1 (LBSG1001005)
  • Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
  • Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
  • Long chain base [18 carbons, 1 unsaturation, 2 hydroxy groups]
  • Modification [Sulfate: 1]
Lactotetraosylceramide of FA 16:0, LCB t18:0 (LBSG3B04001)
  • Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
  • Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
  • Long chain base [18 carbons, 0 unsaturation, 3 hydroxy groups]


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