Category:LBS/Search: Difference between revisions

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{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="yes" onclick="calculateF2M()"}}
{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="yes" onclick="calculateF2M()"}}
<!-- Glycosphingolipid Mass Calculator -->
<table class="wikitable collapsible collapsed" border=1 cellspacing=0 cellpadding=5 style="font-size: small">
<tr><th colspan="5" style="text-align: center; font-weight: 600">Glycosphingolipid Mass Calculator</th></tr>
<tr style="background-color: #ffccff">
  <td colspan="5">
  <table style="text-align: center; font-weight: 600">
    <tr><td style="border: none">{{#formtag:select|name="cs_average" id="cs_average"|{{#formtag:option|value="true"|Average}}{{#formtag:option|value="false"|Exact}} }} Mass</td><td style="border: none">Nominal Mass</td><td style="border: none">Formula</td></tr>
    <tr><td style="border: none">{{#formtag:input|type="text" id="cs_mass" style="width: 12em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_nominalmass" style="width: 6em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_formula" style="width: 14em"}}</td></tr>
  </table>
  </td>
</tr>
<tr style="background-color: #ffcccc">
  <td rowspan="2" style="background-color: #ffaaaa; font-weight: 600">Carbohydrates</td>
  <td>Hexose<br />{{#formtag:input|type="number" min="0" value="0" id="cs_hexose" style="width: 3em"}}</td>
  <td>HexNAc<br />{{#formtag:input|type="number" min="0" value="0" id="cs_hexnac" style="width: 3em"}}</td>
  <td>NeuAc<br />{{#formtag:input|type="number" min="0" value="0" id="cs_neuac" style="width: 3em"}}</td>
  <td>NeuGc<br />{{#formtag:input|type="number" min="0" value="0" id="cs_neugc" style="width: 3em"}}</td>
</tr>
<tr style="background-color: #ffcccc">
  <td>Fucose<br />{{#formtag:input|type="number" min="0" value="0" id="cs_fucose" style="width: 3em"}}</td>
  <td>HexUA<br />{{#formtag:input|type="number" min="0" value="0" id="cs_hexua"  style="width: 3em"}}</td>
  <td>Lactone<br />{{#formtag:input|type="number" min="0" value="0" id="cs_lactone" style="width: 3em"}}</td>
  <td></td>
</tr>
<tr style="background-color: #ccffcc">
  <td style="background-color: #aaffaa; font-weight: 600">Fatty Acids</td>
  <td>Carbon No.<br />{{#formtag:input|type="number" min="0" value="0" id="cs_fa_carbonno" style="width: 3em"}}</td>
  <td>Unsaturation<br />{{#formtag:input|type="number" min="0" value="0" id="cs_fa_unsaturation" style="width: 3em"}}</td>
  <td>Hydroxy group<br />{{#formtag:input|type="number" min="0" value="0" id="cs_fa_hydroxygroup" style="width: 3em"}}</td>
  <td rowspan="3" style="background-color: #ccffff">Polarity<br />{{#formtag:select|name="cs_polarity" id="cs_polarity"|{{#formtag:option|value="0"|NON}}{{#formtag:option|value="1"|POS}}{{#formtag:option|value="-1"|NEG}} }}<br />Charge<br />{{#formtag:input|type="number" min="1" value="1" id="cs_charge" style="width: 3em" disabled="yes"}}
  </td>
</tr>
<tr style="background-color: #ccccff">
  <td style="background-color: #aaaaff; font-weight: 600">Long Chain Bases</td>
  <td>Carbon No.<br />{{#formtag:input|type="number" min="5" value="5" id="cs_lcb_carbonno" style="width: 3em"}}</td>
  <td>Unsaturation<br />{{#formtag:input|type="number" min="0" value="0" id="cs_lcb_unsaturation" style="width: 3em"}}</td>
  <td>Hydroxy group<br />{{#formtag:input|type="number" min="0" value="0" id="cs_lcb_hydroxygroup" style="width: 3em"}}</td>
</tr>
<tr style="background-color: #ccccaa">
  <td style="background-color: #aaaa88; font-weight: 600">Adduct Ions</td>
  <td>Na<br />{{#formtag:input|type="number" min="0" value="0" id="cs_na" style="width: 3em"}}</td>
  <td>K<br />{{#formtag:input|type="number" min="0" value="0" id="cs_k" style="width: 3em"}}</td>
  <td>Ca<br />{{#formtag:input|type="number" min="0" value="0" id="cs_ca" style="width: 3em"}}</td>
</tr>
<tr style="background-color: #cccccc">
  <td rowspan="2" style="background-color: #aaaaaa; font-weight: 600">Modification</td>
  <td>Sulfate<br />{{#formtag:input|type="number" min="0" value="0" id="cs_sulfate" style="width: 3em"}}</td>
  <td>Phosphate<br />{{#formtag:input|type="number" min="0" value="0" id="cs_phosphate" style="width: 3em"}}</td>
  <td>Methyl<br />{{#formtag:input|type="number" min="-99" value="0" id="cs_methyl" style="width: 3em"}}</td>
  <td>Acetyl<br />{{#formtag:input|type="number" min="-99" value="0" id="cs_acetyl" style="width: 3em"}}</td>
</tr>
<tr style="background-color: #cccccc">
  <td>N-Methylamide<br />{{#formtag:input|type="number" min="0" value="0" id="cs_nmethylamide" style="width: 3em"}}</td>
  <td colspan="2"></td>
  <td style="background-color: #ffffff">{{#formtag:input|type="button" value="calculate" id="calculate_glycosphingolipid_button"}}</td>
</tr>
</table>


==Search from Structure==
==Search from Structure==

Revision as of 00:52, 24 April 2017

{{#includejs:LBSSearch.js}} {{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}} {{#includejs:AdvancedLBSSearch.js}}

under construction

Search From Mass

Mass calculator

Formula
 

   →

Precursor Mass (polysaccharide part only) → Product Masses (comma separated)    (tolerance )

Search from Structure

Search from the non-reducing end pattern (click "Show" to expand the table)

Search from the polysaccharide sequence

- - - -

Polysaccharide sequence (Advanced)

{{#persist:ListMainchain|List mainchain|ListMainchain|0|dummy|;}}

Display setting

limit/page order

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