Category:LBS/Search: Difference between revisions

Revision as of 04:25, 22 November 2017

{{#includejs:LBSSearch.js}} {{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}} {{#includejs:GlycosphingolipidMassCalculator.js}} {{#includejs:AdvancedLBSSearch.js}} under construction

Search from Structure

Search from Sphingolipid Major Series
Search from Specific Sugars

Search from the non-reducing end pattern (click "Show" to expand the table)

Name	Structure
1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group A	GalNAc_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group B	Gal_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3GlcNAcb1-3\|Blood group H	Fuc_α1-2Gal_β1-3GlcNAc_β1-3-R
1=Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^a	Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^b	Fuc_α1-2Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3\|sialyl-Lewis^a	NeuAc_α2-3Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^x, SSEA-1	Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^y	Fuc_α1-2Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3\|sialyl-Lewis ^x	NeuAc_α2-3Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1\|Forssman antigen	GalNAc_α1-3GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R
1=Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1\|P antigen	GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R

Search from the polysaccharide sequence

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Polysaccharide sequence (Advanced)
Non-reducing end

All Polysaccharide Sequences

{{#persist:ListMainchain|List mainchain|ListMainchain|0|dummy|;}}

Search From Mass

Mass calculator

Formula

→

Precursor Mass (polysaccharide part only) → Product Masses (comma separated) (tolerance )

Glycosphingolipid Mass Calculator

Mass	Nominal Mass	Formula

Carbohydrates

Hexose

HexNAc

NeuAc

NeuGc

Fucose

HexA

Fatty Acids

Carbon No.

Unsaturation

Hydroxy group

Polarity

Long Chain Bases

Carbon No.

Unsaturation

Hydroxy group

Adduct Ions

Na

K

Ca

Modification

Sulfate

Phosphate

Methyl

Acetyl

Lactone

Display setting

limit/page

order

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@@ Line 3: / Line 3: @@
 {{#includejs:GlycosphingolipidMassCalculator.js}}
 {{#includejs:AdvancedLBSSearch.js}}
 <span style="color: red; font-size: x-large">under construction</span>
+<!--DEFINITIONS-->{{#def:Hexose|Glc..-.~Galf?..-[1-9/]+~Man..-.}} {{#def:HexNAc|GlcNAc([1-6]Me)?..-.~GalNAc([1-6]Me)?..-.}} {{#def:HexA|GlcA([1-6]Me)?..-.|GalA([1-6]Me)?..-.}} {{#def:Fucose|([1-6]-Deoxy-)?Fuc([1-6]Me)?}} {{#def:NeuAc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuAc([1-9]Me|[1-9]Methoxy)?}} {{#def:NeuGc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuGc([1-9]Me|[1-9]Methoxy)?}}
-<!--DEFINITIONS-->
-{{#def:Hexose|Glc..-.~Galf?..-[1-9/]+~Man..-.}}
-{{#def:HexNAc|GlcNAc([1-6]Me)?..-.~GalNAc([1-6]Me)?..-.}}
-{{#def:HexA|GlcA([1-6]Me)?..-.|GalA([1-6]Me)?..-.}}
-{{#def:Fucose|([1-6]-Deoxy-)?Fuc([1-6]Me)?
-{{def:NeuAc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuAc([1-9]Me|[1-9]Methoxy)?}}
-{{def:NeuGc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuGc([1-9]Me|[1-9]Methoxy)?}}
 ==Search from Structure==
+<ul>
+<li> [[:Category:LBS#SphingolipidClass|Search from Sphingolipid Major Series]]
-<!--
+<li> [[:Category:LBS#SphingolipidSugar|Search from Specific Sugars]]
-{{#formtag:fieldset||
-{{#formtag:legend||Sphingolipid Major Series}}
-<table>
- <tr>
-  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Gala</label></td>
-  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Spirometo</label></td>
-  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Ganglio</label></td>
-  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Isoganglio</label></td>
-  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Lactoganglio</label></td>
-  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Ganglio a-series</label></td>
- </tr>
- <tr>
-  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">SM/CPE/CAEP</label></td>
-  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Spirometo</label></td>
-  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC GlcN</label></td>
-  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC GlcA</label></td>
-  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC Man</label></td>
-  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Others</label></td>
- </tr>
-</table>
-}}
--->
-<div style="margin-left: 1.5em">
-[[:Category:LBS#Sphingolipid_.E3.82.B9.E3.83.95.E3.82.A3.E3.83.B3.E3.82.B4.E8.84.82.E8.B3.AA|Search by Sphingolipid Major Series]]<br />
-[[:Category:LBS#Second_.28s2.29_Code_for_subsequent_sugars|Search by Specific Sugars]]<br />
-</div>
-{{#formtag:fieldset||
+<li> {{#formtag:fieldset||
 {{#formtag:legend||Search from the non-reducing end pattern (click "Show" to expand the table)}}
-}}
+}} <table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
-<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
   <tr><th>Name</th><th>Structure</th></tr>
@@ Line 68: / Line 33: @@
 </table>
-{{#formtag:fieldset||
+<li> {{#formtag:fieldset|| {{#formtag:legend||Search from the polysaccharide sequence}}
-{{#formtag:legend||Search from the polysaccharide sequence}}
 <table>
   <tr>
@@ Line 93: / Line 57: @@
 {{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}}
 }}
+</ul>
+==All Polysaccharide Sequences==
 {{#persist:ListMainchain|List mainchain|ListMainchain|0|dummy|;}}
-{{#formtag:fieldset||
-{{#formtag:legend||Display setting}}
-<table>
- <tr>
-  <td>limit/page</td>
-  <td>{{#formtag:select|name="limit_page"|<option>10</option><option>50</option><option>100</option>}}</td>
-  <td>order</td>
-  <td>{{#formtag:select|name="table_id"|<option>lipidbank id</option><option>compound name</option>}} {{#formtag:select|name="sort"|<option>ascending</option><option>descending</option>}}</td>
- </tr>
-</table>
-}}
 ==Search From Mass==
@@ Line 204: / Line 160: @@
   </tr>
 </table>
+{{#formtag:fieldset||
+{{#formtag:legend||Display setting}}
+<table>
+ <tr>
+  <td>limit/page</td>
+  <td>{{#formtag:select|name="limit_page"|<option>10</option><option>50</option><option>100</option>}}</td>
+  <td>order</td>
+  <td>{{#formtag:select|name="table_id"|<option>lipidbank id</option><option>compound name</option>}} {{#formtag:select|name="sort"|<option>ascending</option><option>descending</option>}}</td>
+ </tr>
+</table>
+}}

Category:LBS/Search: Difference between revisions

Revision as of 04:25, 22 November 2017

Search from Structure

All Polysaccharide Sequences

Search From Mass

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