Category:LBS/Search: Difference between revisions

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{{#includejs:AdvancedLBSSearch.js}}
{{#includejs:AdvancedLBSSearch.js}}
<span style="color: red; font-size: x-large">under construction</span>
<span style="color: red; font-size: x-large">under construction</span>
<!--DEFINITIONS--> {{#def:Hexose|((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*}} {{#def:HexNAc|((GlcNAc)~(GalNAc))[-abfp0-9]*}} {{#def:HexA|((GlcA)~(GalA))[-abfp0-9]*}} {{#def:Fucose|([1-6]-Deoxy-)?Fuc([1-6]Me)?}} {{#def:NeuAc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuAc([1-9]Me|[1-9]Methoxy)?}} {{#def:NeuGc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuGc([1-9]Me|[1-9]Methoxy)?}}
<!--DEFINITIONS--> {{#def:Hexose|((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*}} {{#def:HexNAc| ((GlcNAc)~(GalNAc))[-abfp0-9]* }} {{#def:HexA|((GlcA)~(GalA))[-abfp0-9]* }} {{#def:Fucose| ([1-6]-Deoxy-)?Fuc([1-6]Me)? }} {{#def:NeuAc| ([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuAc([1-9]Me|[1-9]Methoxy)?}} {{#def:NeuGc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuGc([1-9]Me|[1-9]Methoxy)?}}
==Search from Structure==
==Search from Structure==
<ul>
<ul>
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  <tr>
  <tr>
   <td>{{#formtag:select|name="nre" id="nre"|<option value="">(Non-reducing end)</option><option value=".*" selected="yes">(any)</option>}}</td>
   <td>{{#formtag:select|name="nre" id="nre"|<option value="">(Non-reducing end)</option><option value=".*" selected="yes">(any)</option>}}</td>
   <td>{{#formtag:select|name="4th" id="4th"|<option value="{{#var:Hexose}}">Hexose</option><option value="{{#var:HexNAc}}">HexNAc</option><option value="{{#var:HexA}}">HexA</option><option value="{{#var:Fucose}}">Fucose</option><option value="{{#var:NeuAc}}">NeuAc</option><option value="{{#var:NeuGc}"}>NeuGc</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
   <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*-.">Hexose</option><option value="((GlcNAc)~(GalNAc))[-abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[-abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">(none)</option>}}</td>
   <td>-</td>
   <td>-</td>
   <td>{{#formtag:select|name="3rd" id="3rd"|<option value="{{#var:Hexose}}">Hexose</option><option value="{{#var:HexNAc}}">HexNAc</option><option value="{{#var:HexA}}">HexA</option><option value="{{#var:Fucose}}">Fucose</option><option value="{{#var:NeuAc}}" selected="yes">NeuAc</option><option value="{{#var:NeuGc}"}>NeuGc</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
   <td>{{#formtag:select|name="3th" id="3th"|<option value="((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*-.">Hexose</option><option value="((GlcNAc)~(GalNAc))[-abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[-abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-." selected="yes">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">(none)</option>}}</td>
  <td>-</td>
 
  <td>{{#formtag:select|name="2nd" id="2nd"|<option value="{{#var:Hexose}}" selected="yes">Hexose</option><option value="{{#var:HexNAc}}">HexNAc</option><option value="{{#var:HexA}}">HexA</option><option value="{{#var:Fucose}}">Fucose</option><option value="{{#var:NeuAc}}">NeuAc</option><option value="{{#var:NeuGc}"}>NeuGc</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
   <td>-</td>
   <td>-</td>
   <td>{{#formtag:select|name="1st" id="1st"|<option value="{{#var:Hexose}}" selected="yes">Hexose</option><option value="{{#var:HexNAc}}">HexNAc</option><option value="{{#var:HexA}}">HexA</option><option value="{{#var:Fucose}}">Fucose</option><option value="{{#var:NeuAc}}">NeuAc</option><option value="{{#var:NeuGc}"}>NeuGc</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*-." selected="yes">Hexose</option><option value="((GlcNAc)~(GalNAc))[-abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[-abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">(none)</option>}}</td>
<td>-</td>
  <td>{{#formtag:select|name="1st" id="1st"|<option value="((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*-." selected="yes">Hexose</option><option value="((GlcNAc)~(GalNAc))[-abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[-abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">(none)</option>}}</td>
   <td>-</td>
   <td>-</td>
   <td>{{#formtag:select|name="re" id="re" |<option value="(Cer~Sph)">Cer/Sph</option><option value=".+">(any)</option>}}</td>
   <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)~(Sph))">Cer/Sph</option><option value=".+">(any)</option>}}</td>
   <td>&nbsp;</td>
   <td>&nbsp;</td>
   <td>{{#formtag:input|name="cals" type="button" value="SEARCH" id="mainchain"}}</td>
   <td>{{#formtag:input|name="cals" type="button" value="SEARCH" id="mainchain"}}</td>
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  </tr>
  </tr>
</table>
</table>
 
}}


{{#formtag:fieldset||
{{#formtag:fieldset||

Revision as of 22:18, 30 November 2017

{{#includejs:LBSSearch.js}} {{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}} {{#includejs:GlycosphingolipidMassCalculator.js}} {{#includejs:AdvancedLBSSearch.js}} under construction

Search from Structure

All Polysaccharide Sequences

{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}}


Search From Mass

Mass calculator

Formula
 

   →

Precursor Mass (polysaccharide part only) → Product Masses (comma separated)    (tolerance )

}}

Display setting

limit/page order

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