Difference between revisions of "Lipoquality:Database"

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<h1>Lipoquality</h1>
 
<h1>Lipoquality</h1>
<p>
 
  
</p>
+
<h2>Dataset</h2>
 +
Please click '''[[Lipoquality:Resource|here]]''' to access LipoQuality data.
  
<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[Lipoquality:Resource|Resource]]</h2>
 
 
 
Please click [[Lipoquality:Resource|here]] to access LipoQuality data.
 
 
<h2>Dataset</h2>
 
 
;Mouse : C75BL/6J mouse fed with fish-less chow for 2 weeks  
 
;Mouse : C75BL/6J mouse fed with fish-less chow for 2 weeks  
 
; Organs : Aorta (ApoE KO), Brain, Heart, Kidney, Liver, Lung, Macrophage, Muscle, Plasma, Plasma (ApoE KO), Small intestine, Spleen
 
; Organs : Aorta (ApoE KO), Brain, Heart, Kidney, Liver, Lung, Macrophage, Muscle, Plasma, Plasma (ApoE KO), Small intestine, Spleen
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<h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">{{Bilingual|脂質記載法|Notation}}</h2>
+
<h2>{{Bilingual|脂質記載法|Notation}}</h2>
<p>
+
 
 
The style follows the proposal for lipidomics nomenclature
 
The style follows the proposal for lipidomics nomenclature
 
(Pauling JK et al. PLOS ONE 2017, PMID 29161304). Please visit [http://prime.psc.riken.jp/Metabolomics_Software/MS-DIAL/index5.html the MS-DIAL page] for more details.
 
(Pauling JK et al. PLOS ONE 2017, PMID 29161304). Please visit [http://prime.psc.riken.jp/Metabolomics_Software/MS-DIAL/index5.html the MS-DIAL page] for more details.
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! ''non-hydroxy FA''<br/>[N]
 
! ''non-hydroxy FA''<br/>[N]
 
! ''&alpha;-hydroxy FA''<br/>[A]
 
! ''&alpha;-hydroxy FA''<br/>[A]
 +
! ''&beta;-hydroxy FA'' <br/>[B]
 
! ''esterified &omega;-hydroxy FA''<br/>[EO]
 
! ''esterified &omega;-hydroxy FA''<br/>[EO]
 
|-
 
|-
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| Cer-NDS
 
| Cer-NDS
 
| Cer-ADS
 
| Cer-ADS
 +
| Cer-BDS
 
| Cer-EODS
 
| Cer-EODS
 
|-
 
|-
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| Cer-NS
 
| Cer-NS
 
| Cer-AS
 
| Cer-AS
 +
| Cer-BS
 
| Cer-EOS
 
| Cer-EOS
 
|-
 
|-
 
! ''phytosphingosine''<br/>[P]
 
! ''phytosphingosine''<br/>[P]
| Cer-AP
 
 
| Cer-NP
 
| Cer-NP
 +
| Cer-AP
 +
| Cer-BP
 
| Cer-EOP
 
| Cer-EOP
 
|-
 
|-
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| Cer-NH
 
| Cer-NH
 
| Cer-AH
 
| Cer-AH
 +
| Cer-BH
 
| Cer-EOH
 
| Cer-EOH
 
|}
 
|}
  
 
<references/>
 
<references/>

Revision as of 17:31, 1 May 2019

Lipoquality

Dataset

Please click here to access LipoQuality data.

Mouse 
C75BL/6J mouse fed with fish-less chow for 2 weeks
Organs 
Aorta (ApoE KO), Brain, Heart, Kidney, Liver, Lung, Macrophage, Muscle, Plasma, Plasma (ApoE KO), Small intestine, Spleen
Measurement 
See Metabolonote database.


Notation

The style follows the proposal for lipidomics nomenclature (Pauling JK et al. PLOS ONE 2017, PMID 29161304). Please visit the MS-DIAL page for more details.

Phosphoglycerolipid symbols
Name Notation
Phosphatidic acid PA
R2-lyso-PA LPA
Phosphatidyl-choline PC
R2-lyso-PC LPC
R1-ether-PC EtherPC
Phosphatidyl-ethanolamine PE
R2-lyso-PE LPE
R1-ether-PE EtherPE
Phosphatidyl-inositol PI
R2-lyso-PI LPI
Phosphatidyl-serine PS
R2-lyso-PS LPS
Phosphatidyl-glycerol PG
R2-lyso-PG LPG
Bis(monoacylglycero)phosphate BMP
1-Monoacylglycerol-phospho-2,3-diacylglycerol HBMP
Cardiolipin CL
Glycerolipid, Plant lipid, and other symbols
Name Notation
Triacylglycerol TAG
Diacylglycerol DAG
Monoacylglycerol MAG
Monogalactosyl-diacylglycerol MGDG
Digalactosyl-diacylglycerol DGDG
Sulfoquinovosyl-diacylglycerol SQDG
Diacylglyceryl-trimethylhomoserine DGTS
Glucuronosyl-diacylglycerol GlcADG
Fatty acid FA
Fatty acid ester of hydroxyl fatty acid FAHFA
Acylcarnitine ACar
Sphingomyelin SM
Ceramide symbols[1]
non-hydroxy FA
[N]
α-hydroxy FA
[A]
β-hydroxy FA
[B]
esterified ω-hydroxy FA
[EO]
dihydrosphingosine
[DS]
Cer-NDS Cer-ADS Cer-BDS Cer-EODS
sphingosine
[S]
Cer-NS Cer-AS Cer-BS Cer-EOS
phytosphingosine
[P]
Cer-NP Cer-AP Cer-BP Cer-EOP
6-hydroxy sphingosine
[H]
Cer-NH Cer-AH Cer-BH Cer-EOH
  1. Masukawa Y et al. "Characterization of overall ceramide species in human stratum corneums" J Lipid Res 49:1466-1476, 2008
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