Difference between revisions of "Lipoquality:Database"

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<h1>Lipoquality</h1>
 
<h1>Lipoquality</h1>
  
<h2>Dataset</h2>
+
<h2>Lipidomics data resource</h2>
 
Go to '''[[Lipoquality:Resource|LipoQuality resource page]]''' for browsing lipidomics data.
 
Go to '''[[Lipoquality:Resource|LipoQuality resource page]]''' for browsing lipidomics data.
  
;Mouse : C75BL/6J mouse fed with fish-less chow for 2 weeks
+
; Homo sapiens : NIST plasma (SRM 1950)
; Organs : Aorta (ApoE KO), Brain, Heart, Kidney, Liver, Lung, Macrophage, Muscle, Plasma, Plasma (ApoE KO), Small intestine, Spleen
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; <nowiki>Mus musculus (background: C57BL/6J; diet: CE2, chows of PUFA-dietary controled studies)</nowiki> : Adrenal gland, Atrium, Brain, Brown adipose tissue, Cerebellum, Cortex, Epididymis, Eye, Feces, Heart, Kidney, Large intestine, Liver, Lung, Macrophage, Medulla, Pancreas, Plasma, Seminal, Skeletal muscle, Skin, Small intestine, Spleen, Stomach, Testis, Thymus, Tongue, Ventricle, White adipose tissue
; Measurement : See [http://metabolonote.kazusa.or.jp/SE110:/MS2 Metabolonote] database.
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; Human cultured cell : HEK293, HeLa, Jurkat, LNCaP, PC3, TPC-1
 +
; Mouse cultured cell : 3T3-L1, C2C12
 +
; Plant : <i>Arabidopsis thaliana, Oryza sativa, Solanum melongena</i>
 +
; Algae : <i>Auxenochlorella protothecoides, Chlamydomonas reinhardtii, Chlorella sorokiniana, Chlorella variabilis, Dunaliella salina, Euglena gracilis, Nannochloropsis oculata, Pavlova lutheri, Pleurochrysis carterae</i>
  
  

Revision as of 09:16, 22 January 2020

Lipoquality

Lipidomics data resource

Go to LipoQuality resource page for browsing lipidomics data.

Homo sapiens 
NIST plasma (SRM 1950)
Mus musculus (background: C57BL/6J; diet: CE2, chows of PUFA-dietary controled studies) 
Adrenal gland, Atrium, Brain, Brown adipose tissue, Cerebellum, Cortex, Epididymis, Eye, Feces, Heart, Kidney, Large intestine, Liver, Lung, Macrophage, Medulla, Pancreas, Plasma, Seminal, Skeletal muscle, Skin, Small intestine, Spleen, Stomach, Testis, Thymus, Tongue, Ventricle, White adipose tissue
Human cultured cell 
HEK293, HeLa, Jurkat, LNCaP, PC3, TPC-1
Mouse cultured cell 
3T3-L1, C2C12
Plant 
Arabidopsis thaliana, Oryza sativa, Solanum melongena
Algae 
Auxenochlorella protothecoides, Chlamydomonas reinhardtii, Chlorella sorokiniana, Chlorella variabilis, Dunaliella salina, Euglena gracilis, Nannochloropsis oculata, Pavlova lutheri, Pleurochrysis carterae


Notation

The style follows the proposal for lipidomics nomenclature (Liebisch G et al. J Lipid Res 2013. PMID 23549332). Please visit the MS-DIAL page for more details.

Phosphoglycerolipid symbols
Name Notation
Phosphatidic acid PA
R2-lyso-PA LPA
Phosphatidyl-choline PC
R2-lyso-PC LPC
R1-ether-PC EtherPC
Phosphatidyl-ethanolamine PE
R2-lyso-PE LPE
R1-ether-PE EtherPE
Phosphatidyl-inositol PI
R2-lyso-PI LPI
Phosphatidyl-serine PS
R2-lyso-PS LPS
Phosphatidyl-glycerol PG
R2-lyso-PG LPG
Bis(monoacylglycero)phosphate BMP
1-Monoacylglycerol-phospho-2,3-diacylglycerol HBMP
Cardiolipin CL
Glycerolipid, Plant lipid, and other symbols
Name Notation
Triacylglycerol TG
Diacylglycerol DG
Monoacylglycerol MG
Monogalactosyl-diacylglycerol MGDG
Digalactosyl-diacylglycerol DGDG
Sulfoquinovosyl-diacylglycerol SQDG
Diacylglyceryl-trimethylhomoserine DGTS
Glucuronosyl-diacylglycerol DGGA
Fatty acid FA
Fatty acid ester of hydroxyl fatty acid FAHFA
Acylcarnitine CAR
Sphingomyelin SM
Ceramide symbols[1]
non-hydroxy FA
[N]
α-hydroxy FA
[A]
β-hydroxy FA
[B]
esterified ω-hydroxy FA
[EO]
dihydrosphingosine
[DS]
Cer-NDS Cer-ADS Cer-BDS Cer-EODS
sphingosine
[S]
Cer-NS Cer-AS Cer-BS Cer-EOS
phytosphingosine
[P]
Cer-NP Cer-AP Cer-BP Cer-EOP
6-hydroxy sphingosine
[H]
Cer-NH Cer-AH Cer-BH Cer-EOH
  1. Masukawa Y et al. "Characterization of overall ceramide species in human stratum corneums" J Lipid Res 49:1466-1476, 2008
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