Category:LBA - Revision history

Editor: Redirecting to Category:LBGA

2013-03-24T07:45:07Z

Editor: /* Backbone Structure 基本構造 */

2013-03-14T22:21:03Z

Backbone Structure 基本構造

← Older revision		Revision as of 07:21, 15 March 2013
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	!colspan="3"\| Sugar		!colspan="3"\| Sugar
	\|-		\|-
	! A \|\| C \|\| others \|\| N \|\| I \|\| others \|\| G \|\| X \|\| others		! ArOH \|\| CArOH \|\| others \|\| None \|\| Ino \|\| others \|\| Glc,Gal \|\| Gro etc \|\| others
	\|-		\|-
	{{#replace:		{{#replace:
	{{#lua:		{{#lua:
	~~desulfurococcales =~~{{A=0,C=0},{N=0,I=0},{G=0,X=0}}		function createBucket() return {{A=0,C=0},{N=0,I=0},{G=0,X=0}} end
	sulfolobales =~~{{A=0,C=0},{N=0,I=0},{G=0,X=0}}~~		desulfurococcales = createBucket()
	thermoproteales =~~{{A=0,C=0},{N=0,I=0},{G=0,X=0}}~~		sulfolobales = createBucket()
	thermococcales =~~{{A=0,C=0},{N=0,I=0},{G=0,X=0}}~~		thermoproteales = createBucket()
	thermoplasmatales =~~{{A=0,C=0},{N=0,I=0},{G=0,X=0}}~~		thermococcales = createBucket()
	halobacteriales =~~{{A=0,C=0},{N=0,I=0},{G=0,X=0}}~~		thermoplasmatales = createBucket()
	methanobacteriales =~~{{A=0,C=0},{N=0,I=0},{G=0,X=0}}~~		halobacteriales = createBucket()
	methanococcales =~~{{A=0,C=0},{N=0,I=0},{G=0,X=0}}~~		methanobacteriales = createBucket()
	methanomicrobiales =~~{{A=0,C=0},{N=0,I=0},{G=0,X=0}}~~		methanococcales = createBucket()
	methanopyrales =~~{{A=0,C=0},{N=0,I=0},{G=0,X=0}}~~		methanomicrobiales = createBucket()
	methanosarcinales =~~{{A=0,C=0},{N=0,I=0},{G=0,X=0}}~~		methanopyrales = createBucket()
			methanosarcinales = createBucket()

	function printRow(name, T, reg) print("\n&- align='~~right~~'\n&[[Volatile:ListMolByReference&"..reg.."&"..name.."]] && ")		function printRow(name, T, reg)
			if (string.find(name, "halobacter") ~= nil)
			then print('\n&- align="right" style="background-color:#ddf"')
			elseif (string.find(name, "methano") == nil)
			then print('\n&- align="right" style="background-color:#fdd"')
			else
			print('\n&- align="right"')
			end
			print("&[[Volatile:ListMolByReference&"..reg.."&"..name.."]] && ")
	print(T[1]["A"].."\n&&"..T[1]["C"].."\n&&") T[1]["A"] = nil T[1]["C"] = nil		print(T[1]["A"].."\n&&"..T[1]["C"].."\n&&") T[1]["A"] = nil T[1]["C"] = nil
	for k,v in pairs(T[1]) do print(k.."("..v..") ") end print(" && ")		for k,v in pairs(T[1]) do print(k.."("..v..") ") end print(" && ")
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	end		end

	function register(T, id) local s = string.sub(id,4,4) if (T[1][s] == nil) then T[1][s]=1 else T[1][s]= T[1][s] + 1 end s = string.sub(id,5,5) if (T[2][s] == nil) then T[2][s]=1 else T[2][s]= T[2][s] + 1 end s = string.sub(id,6,6) if (T[3][s] == nil) then T[3][s]=1 else T[3][s]= T[3][s] + 1 end end		function register(T, id)
			local s = string.sub(id,4,4)
			if (T[1][s] == nil) then T[1][s]=1 else T[1][s]= T[1][s] + 1 end
			s = string.sub(id,5,5)
			if (T[2][s] == nil) then T[2][s]=1 else T[2][s]= T[2][s] + 1 end
			s = string.sub(id,6,6)
			if (T[3][s] == nil) then T[3][s]=1 else T[3][s]= T[3][s] + 1 end
			end

	for ref, sp, id in stdin:gmatch("&?&?([%w\. ]+)&&([%w\., ]+)&&([^\n]+)") do		for ref, sp, id in stdin:gmatch("&?&?([%w\. ]+)&&([%w\., ]+)&&([^\n]+)") do
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	printRow("methanomicrobiales",methanomicrobiales, "Methanomicrobium~Methanospirillum")		printRow("methanomicrobiales",methanomicrobiales, "Methanomicrobium~Methanospirillum")
	printRow("methanopyrales",methanopyrales, "Methanopyrus")		printRow("methanopyrales",methanopyrales, "Methanopyrus")
	printRow("~~mehtanosarcinales~~",methanosarcinales, "Methanococcoides~Methanohalophilus~Methanolobus~Methanosarcina")		printRow("methanosarcinales",methanosarcinales, "Methanococcoides~Methanohalophilus~Methanolobus~Methanosarcina")
	\|		\|
	{{#SearchLine:&&LBA\|Reference}}		{{#SearchLine:&&LBA\|Reference}}

Editor: /* {{Bilingual|系統|Phylogeny}} */

2013-03-14T21:40:47Z

← Older revision		Revision as of 06:40, 15 March 2013
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	==={{Bilingual\|系統\|Phylogeny}}===		==={{Bilingual\|系統\|Phylogeny}}===
	{{Twocolumn\|		{{Twocolumn\|
	Archaea are separated into two phyla which show three different characters (Table 1~~: leftmost column~~).		Archaea are separated into two phyla which show three different characters (Table 1).
	\|		\|
	アーキアはcrenarchaeotaとeuryarchaetaに分かれますが、		アーキアはcrenarchaeotaとeuryarchaetaに分かれますが、
	~~特徴からみると三通りになります（表の最左カラム）。~~		特徴からみると三通りになります（表1）。
	}}		}}

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	\|+ Table 1. {{Bilingual\|アーキアの分類\|Clades in Archaea}}		\|+ Table 1. {{Bilingual\|アーキアの分類\|Clades in Archaea}}
	\|-		\|-
	! ~~{{Bilingual\|特徴\|Character}} \|\|~~ Phyrum (綱) \|\| Order (目) \|\| Family (科)		! Phyrum (綱) \|\| Order (目) \|\| Family (科) \|\| {{Bilingual\|特徴\|Character}}
	\|-		\|- style="background-color:#fdd"
	~~!rowspan="5"~~\|{{Bilingual\|~~メタンを生成しない超好熱菌~~\|~~Non-methanogenic<br/>hyperthermophils~~}}		!rowspan="3"\|crenarchaeota
	\|rowspan="3"\|crenarchaeota
	\|desulfurococcales \|\| desulfurococcaceae, pyrodictiaceae		\|desulfurococcales \|\| desulfurococcaceae, pyrodictiaceae
	\|-		\|rowspan="5"\|{{Bilingual\|メタンを生成しない超好熱菌\|Non-methanogenic<br/>(hyper) thermophils}}
			\|- style="background-color:#fdd"
	\|sulfolobales \|\| sulfolobaceae		\|sulfolobales \|\| sulfolobaceae
	\|-		\|- style="background-color:#fdd"
	\|thermoproteales \|\| thermoproteaceae		\|thermoproteales \|\| thermoproteaceae
	\|-		\|- style="background-color:#fdd"
	\|rowspan="8"\|euryarchaeota		!rowspan="8"\|euryarchaeota
	\|thermococcales \|\| thermococcaceae		\|thermococcales \|\| thermococcaceae
	\|-		\|- style="background-color:#fdd"
	\|thermoplasmatales \|\| thermoplasmataceae		\|thermoplasmatales \|\| thermoplasmataceae
	\|-		\|- style="background-color:#ddf"
	~~!{{Bilingual\|高度好塩菌\|Halophils}}~~
	\|halobacteriales \|\| halobacteriaceae		\|halobacteriales \|\| halobacteriaceae
			\|{{Bilingual\|高度好塩菌\|Halophils}}
	\|-		\|-
	~~!rowspan="5"\|{{Bilingual\|メタン生成菌\|Methanogens}}~~
	\|methanobacteriales \|\| methanobacteriaceae, methanothermaceae		\|methanobacteriales \|\| methanobacteriaceae, methanothermaceae
			\|rowspan="5"\|{{Bilingual\|メタン生成菌\|Methanogens}}
	\|-		\|-
	\| methanococcales \|\| methanococcaceae, methanocaldococcaceae		\| methanococcales \|\| methanococcaceae, methanocaldococcaceae

Editor: /* Backbone Structure 基本構造 */

2013-03-14T15:15:17Z

Backbone Structure 基本構造

← Older revision		Revision as of 00:15, 15 March 2013
Line 159:		Line 159:

	{\| class="wikitable"		{\| class="wikitable"
	! Order \|\| Backbone ~~(see left) \|~~\| Polar-head \|\| ~~Sugar~~		!rowspan="2"\| Order
			!colspan="3"\| Backbone
			!colspan="3"\| Polar-head
			!colspan="3"\| Sugar
			\|-
			! A \|\| C \|\| others \|\| N \|\| I \|\| others \|\| G \|\| X \|\| others
			\|-
	{{#replace:		{{#replace:
	{{#lua:		{{#lua:
	desulfurococcales ={{},{},{}}		desulfurococcales ={{A=0,C=0},{N=0,I=0},{G=0,X=0}}
	sulfolobales ={{},{},{}}		sulfolobales ={{A=0,C=0},{N=0,I=0},{G=0,X=0}}
	thermoproteales ={{},{},{}}		thermoproteales ={{A=0,C=0},{N=0,I=0},{G=0,X=0}}
	thermococcales ={{},{},{}}		thermococcales ={{A=0,C=0},{N=0,I=0},{G=0,X=0}}
	thermoplasmatales ={{},{},{}}		thermoplasmatales ={{A=0,C=0},{N=0,I=0},{G=0,X=0}}
	halobacteriales ={{},{},{}}		halobacteriales ={{A=0,C=0},{N=0,I=0},{G=0,X=0}}
	methanobacteriales ={{},{},{}}		methanobacteriales ={{A=0,C=0},{N=0,I=0},{G=0,X=0}}
	methanococcales ={{},{},{}}		methanococcales ={{A=0,C=0},{N=0,I=0},{G=0,X=0}}
	methanomicrobiales ={{},{},{}}		methanomicrobiales ={{A=0,C=0},{N=0,I=0},{G=0,X=0}}
	methanopyrales ={{},{},{}}		methanopyrales ={{A=0,C=0},{N=0,I=0},{G=0,X=0}}
	methanosarcinales ={{},{},{}}		methanosarcinales ={{A=0,C=0},{N=0,I=0},{G=0,X=0}}

	function printRow(name, T, reg) print("\n&-\n&[[Volatile:ListMolByReference&"..reg.."&"..name.."]] && ") for k,v in pairs(T[1]) do print(k.."("..v..") ") end print(" && ") for k,v in pairs(T[2]) do print(k.."("..v..") ") end print(" && ") for k,v in pairs(T[3]) do print(k.."("..v..") ") end end		function printRow(name, T, reg) print("\n&- align='right'\n&[[Volatile:ListMolByReference&"..reg.."&"..name.."]] && ")
			print(T[1]["A"].."\n&&"..T[1]["C"].."\n&&") T[1]["A"] = nil T[1]["C"] = nil
			for k,v in pairs(T[1]) do print(k.."("..v..") ") end print(" && ")
			print(T[2]["N"].."\n&&"..T[2]["I"].."\n&&") T[2]["N"] = nil T[2]["I"] = nil
			for k,v in pairs(T[2]) do print(k.."("..v..") ") end print(" && ")
			print(T[3]["G"].."\n&&"..T[3]["X"].."\n&&") T[3]["G"] = nil T[3]["X"] = nil
			for k,v in pairs(T[3]) do print(k.."("..v..") ") end
			end

	function register(T, id) local s = string.sub(id,4,4) if (T[1][s] == nil) then T[1][s]=1 else T[1][s]= T[1][s] + 1 end s = string.sub(id,5,5) if (T[2][s] == nil) then T[2][s]=1 else T[2][s]= T[2][s] + 1 end s = string.sub(id,6,6) if (T[3][s] == nil) then T[3][s]=1 else T[3][s]= T[3][s] + 1 end end		function register(T, id) local s = string.sub(id,4,4) if (T[1][s] == nil) then T[1][s]=1 else T[1][s]= T[1][s] + 1 end s = string.sub(id,5,5) if (T[2][s] == nil) then T[2][s]=1 else T[2][s]= T[2][s] + 1 end s = string.sub(id,6,6) if (T[3][s] == nil) then T[3][s]=1 else T[3][s]= T[3][s] + 1 end end

Editor: /* Backbone Structure 基本構造 */

2013-03-14T08:01:26Z

Backbone Structure 基本構造

← Older revision		Revision as of 17:01, 14 March 2013
Line 138:		Line 138:
	! Backbone Structure		! Backbone Structure
	\|- valign="top"		\|- valign="top"
	\|[[Volatile:ListMol?my_1=LBGAA\|A: archaeol]] (C20,C20 type below) <br/>[[Image:~~LBAA~~.png]]		\|[[Volatile:ListMol?my_1=LBGAA\|A: archaeol]] (C20,C20 type below) <br/>[[Image:LBGAA.png]]
	\|-		\|-
	\|[[Volatile:ListMol?my_1=LBGAH\|H: hydroxy & methoxy archaeol]] (sn-2-hydroxy below) <br/>[[Image:~~LBAH~~.png]]		\|[[Volatile:ListMol?my_1=LBGAH\|H: hydroxy & methoxy archaeol]] (sn-2-hydroxy below) <br/>[[Image:LBGAH.png]]
	\|-		\|-
	\|[[Volatile:ListMol?my_1=LBGAU\|U: unsaturated (alkenyl) archaeol]]<br/>[[Image:~~LBAU~~.png]]		\|[[Volatile:ListMol?my_1=LBGAU\|U: unsaturated (alkenyl) archaeol]]<br/>[[Image:LBGAU.png]]
	\|-		\|-
	\|[[Volatile:ListMol?my_1=LBGAC\|C: caldachaeol]] (tetraether type)<br/>[[Image:~~LBAC~~.png]]		\|[[Volatile:ListMol?my_1=LBGAC\|C: caldachaeol]] (tetraether type)<br/>[[Image:LBGAC.png]]
	\|-		\|-
	\|[[Volatile:ListMol?my_1=LBGAD\|D: calditocaldarchaeol]]<br/>[[Image:~~LBAD~~.png]]		\|[[Volatile:ListMol?my_1=LBGAD\|D: calditocaldarchaeol]]<br/>[[Image:LBGAD.png]]
	\|-		\|-
	\|[[Volatile:ListMol?my_1=LBGAY\|Y: cyclic archaeol]]<br/>[[Image:~~LBAY~~.png]]		\|[[Volatile:ListMol?my_1=LBGAY\|Y: cyclic archaeol]]<br/>[[Image:LBGAY.png]]
	\|}		\|}

Editor: /* {{Bilingual|ID番号 (ページ名) の設計|Design of Fat acyl Page Titles}} */

2013-03-14T07:24:20Z

← Older revision		Revision as of 16:24, 14 March 2013
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	}}		}}
	<center>		<center>
	9-DIGIT		10-DIGIT
	<table border=1>		<table border=1>
	<tr>		<tr>
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	* ''x'' ... backbone type		* ''x'' ... backbone type
	* ''y'' ... polar-head type		* ''y'' ... polar-head type
	* ''z'' ... ~~sugar type~~		* ''z'' ... number of sugars
	* ''w'' ... ~~number of sugars~~		* ''w'' ... sugar type
	* ''c'' ... serial number		* ''c'' ... serial number
	\|		\|
	* ''x'' ... バックボーンの構造		* ''x'' ... バックボーンの構造
	* ''y'' ... 極性基（リン酸部分）の構造		* ''y'' ... 極性基（リン酸部分）の構造
	* ''z'' ... ~~糖のタイプ~~		* ''z'' ... 糖の個数
	* ''w'' ... ~~糖の個数~~		* ''w'' ... 糖のタイプ
	* ''c'' ... 通し番号		* ''c'' ... 通し番号
	}}		}}

Editor at 07:02, 14 March 2013

2013-03-14T07:02:37Z

← Older revision		Revision as of 16:02, 14 March 2013
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	{\|		{\|
	\|-		\|-
	!Archaeol (= 2,3-di-O-alkyl sn-glycerol diether) [[Image:~~LBAA~~.png]]		!Archaeol (= 2,3-di-O-alkyl sn-glycerol diether) [[Image:LBGAA.png]]
	\|{{Twocolumn		\|{{Twocolumn
	\|The alkyl chain is either C20- or C25-isoprene. Archaetidic acid refers to its monophophate ether.		\|The alkyl chain is either C20- or C25-isoprene. Archaetidic acid refers to its monophophate ether.
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	}}		}}
	\|-		\|-
	!Caldarchaeol [[Image:~~LBAC~~.png]]		!Caldarchaeol [[Image:LBGAC.png]]
	\|{{Twocolumn		\|{{Twocolumn
	\|An tetraether where 2 glycerol molecules are connected with 2 alkanediols at sn-2 and sn-3 positions. It was first identified from a hyperthermophil, and therefore has "cald" (i.e. hot) in its name.		\|An tetraether where 2 glycerol molecules are connected with 2 alkanediols at sn-2 and sn-3 positions. It was first identified from a hyperthermophil, and therefore has "cald" (i.e. hot) in its name.
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	}}		}}
	\|-		\|-
	!Isocaldarchaeol [[Image:~~LBAI~~.png]]		!Isocaldarchaeol [[Image:LBGAI.png]]
	\|{{Twocolumn		\|{{Twocolumn
	\|A geometric isomer of caldarchaeol where the alkanediols connect sn-2 and sn-2 (or sn-3 and sn-3) positions.		\|A geometric isomer of caldarchaeol where the alkanediols connect sn-2 and sn-2 (or sn-3 and sn-3) positions.
Line 82:		Line 82:
	}}		}}
	\|-		\|-
	! Calditocaldarchaeol [[Image:~~LBAD~~.png]]		! Calditocaldarchaeol [[Image:LBGAD.png]]
	\|{{Twocolumn		\|{{Twocolumn
	\|Calditol refers to a 5-carbon cyclic polyol connected to sn-1 glycerol by an ether linkage. It was first identified from ''Caldariella acidophila'' (now ''Sulfolobus solfataricus'' A.T.C.C. 49155) and was called nonitol with a wrong structure. (A brief history is in Bleriot et al., 2002).<ref>Bleriot Y, Untersteller E, Fritz B, Sinay P (2002) "Total Synthesis of calditol: Structural clarification of this typical component of archaea order Sulfolobales", Chemistry, 8(1):240-246</ref>)		\|Calditol refers to a 5-carbon cyclic polyol connected to sn-1 glycerol by an ether linkage. It was first identified from ''Caldariella acidophila'' (now ''Sulfolobus solfataricus'' A.T.C.C. 49155) and was called nonitol with a wrong structure. (A brief history is in Bleriot et al., 2002).<ref>Bleriot Y, Untersteller E, Fritz B, Sinay P (2002) "Total Synthesis of calditol: Structural clarification of this typical component of archaea order Sulfolobales", Chemistry, 8(1):240-246</ref>)
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	=={{Bilingual\|ID番号 (ページ名) の設計\|Design of Fat acyl Page Titles}}==		=={{Bilingual\|ID番号 (ページ名) の設計\|Design of Fat acyl Page Titles}}==
	{{Twocolumn\|		{{Twocolumn\|
	Each ID contains information on backbone type, chemical modification of polar head, and attached sugars.		Archaeal lipid is categorized in glycerolipid (LBG). Each ID contains information on backbone type, chemical modification of polar head, and attached sugars.
	\|		\|
	~~各分子のページIDは基本骨格、極性基のタイプ、糖のタイプがコード化されています。~~		古細菌の脂質はグリセロ脂質 (LBG) に含まれます。各分子のページIDは基本骨格、極性基のタイプ、糖のタイプがコード化されています。
	}}		}}
	<center>		<center>
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	<td style="background-color:yellowgreen;" width=15px align="center"><big>L</big>		<td style="background-color:yellowgreen;" width=15px align="center"><big>L</big>
	<td style="background-color:yellowgreen;" width=15px align="center"><big>B</big>		<td style="background-color:yellowgreen;" width=15px align="center"><big>B</big>
			<td style="background-color:yellowgreen;" width=15px align="center"><big>G</big>
	<td style="background-color:darkseagreen;" width=15px align="center"><big>A</big>		<td style="background-color:darkseagreen;" width=15px align="center"><big>A</big>
	<td style="background-color:tomato; color:white" width=15px align="center"><big>''x''</big>		<td style="background-color:tomato; color:white" width=15px align="center"><big>''x''</big>
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	! Backbone Structure		! Backbone Structure
	\|- valign="top"		\|- valign="top"
	\|[[Volatile:ListMol?my_1=~~LBAA~~\|A: archaeol]] (C20,C20 type below) <br/>[[Image:LBAA.png]]		\|[[Volatile:ListMol?my_1=LBGAA\|A: archaeol]] (C20,C20 type below) <br/>[[Image:LBAA.png]]
	\|-		\|-
	\|[[Volatile:ListMol?my_1=~~LBAH~~\|H: hydroxy & methoxy archaeol]] (sn-2-hydroxy below) <br/>[[Image:LBAH.png]]		\|[[Volatile:ListMol?my_1=LBGAH\|H: hydroxy & methoxy archaeol]] (sn-2-hydroxy below) <br/>[[Image:LBAH.png]]
	\|-		\|-
	\|[[Volatile:ListMol?my_1=~~LBAU~~\|U: unsaturated (alkenyl) archaeol]]<br/>[[Image:LBAU.png]]		\|[[Volatile:ListMol?my_1=LBGAU\|U: unsaturated (alkenyl) archaeol]]<br/>[[Image:LBAU.png]]
	\|-		\|-
	\|[[Volatile:ListMol?my_1=~~LBAC~~\|C: caldachaeol]] (tetraether type)<br/>[[Image:LBAC.png]]		\|[[Volatile:ListMol?my_1=LBGAC\|C: caldachaeol]] (tetraether type)<br/>[[Image:LBAC.png]]
	\|-		\|-
	\|[[Volatile:ListMol?my_1=~~LBAD~~\|D: calditocaldarchaeol]]<br/>[[Image:LBAD.png]]		\|[[Volatile:ListMol?my_1=LBGAD\|D: calditocaldarchaeol]]<br/>[[Image:LBAD.png]]
	\|-		\|-
	\|[[Volatile:ListMol?my_1=~~LBAY~~\|Y: cyclic archaeol]]<br/>[[Image:LBAY.png]]		\|[[Volatile:ListMol?my_1=LBGAY\|Y: cyclic archaeol]]<br/>[[Image:LBAY.png]]
	\|}		\|}

Editor: /* Backbone Structure 基本構造 */

2013-03-12T05:17:44Z

Backbone Structure 基本構造

← Older revision		Revision as of 14:17, 12 March 2013
Line 151:		Line 151:

	\|valign="top"\|		\|valign="top"\|

			;Polar-head Type : N: no structure; P: phosphate; C: phosphocholine; E: phosphoethanolamine; I: phosphoinositol; S: phosphoserine; G: phosphoglycerol; A: aminopentanetetrol; X: others

			;Sugar Type : G: glucose and galactose; M: including mannose; L: including gulose; S: including HSO3; X: others;
			\|}

	{\| class="wikitable"		{\| class="wikitable"
Line 214:		Line 219:
	\|}		\|}

	~~;Polar-head Type : N: no structure; P: phosphate; C: phosphocholine; E: phosphoethanolamine; I: phosphoinositol; S: phosphoserine; G: phosphoglycerol; A: aminopentanetetrol; X: others~~

	~~;Sugar Type : G: glucose and galactose; M: including mannose; L: including gulose; S: including HSO3; X: others;~~
	\|}
	</center>		</center>

Editor: /* Class Overview */

2013-03-11T08:21:05Z

Class Overview

← Older revision		Revision as of 17:21, 11 March 2013
Line 6:		Line 6:

	{{Twocolumn\|		{{Twocolumn\|
	Archaeal lipid is composed of sn-glycerol 1-phosphate and isoprenoids. This composition is different from lipid in eubacteria and eukaryotes, which comprises of sn-glycerol 3-phosphate and fatty acids. Responsible enzymes are also non-homologous. Archaea also contains tetraether ~~lipid~~		Archaeal lipid is composed of sn-glycerol 1-phosphate and ether-linked isoprenoids. This composition is different from lipid in eubacteria and eukaryotes, which comprises of sn-glycerol 3-phosphate and ester-linked fatty acids. Responsible biosynthetic enzymes are also non-homologous. Archaea also contains tetraether lipids in which two isoprenes are ether-linked with two glycerols at both ends (caldarchaeol).
	\|		\|
	アーキア<~~cite~~>古細菌と呼ばれることが多いのですが、真性細菌と明確に区別するためにここではアーキアと記します。</~~cite~~>の脂質は、		アーキア<ref>古細菌と呼ばれることが多いのですが、真性細菌と明確に区別するためにここではアーキアと記します。</ref>の脂質は、
	sn-グリセロール1リン酸にイソプレン骨格がエーテル結合しています。		sn-グリセロール1リン酸にイソプレン骨格がエーテル結合しています。
	これは、グリセロール3リン酸と脂肪酸を利用する真性細菌や真核生物と全く異なる構造で、生合成をおこなう酵素も相同ではありません。またテトラエーテル型と呼ばれるイソプレン骨格が末端で重合した環状脂質も広く存在し、これが単分子膜を形成すると考えられています。		これは、グリセロール3リン酸と脂肪酸を利用する真性細菌や真核生物と全く異なる構造で、生合成をおこなう酵素も相同ではありません。またテトラエーテル型と呼ばれるイソプレン骨格が末端で2分子のグリセロールとエーテル結合した環状脂質（カルドアーキオール）も広く存在します。
	}}		}}

Editor: /* {{Bilingual|脂質命名法|Nomenclature}} */

2013-03-11T06:18:28Z

← Older revision		Revision as of 15:18, 11 March 2013
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	==={{Bilingual\|脂質命名法\|Nomenclature}}===		==={{Bilingual\|脂質命名法\|Nomenclature}}===
	{{~~Bilingual~~\|		{{Twocolumn\|
	Much of archaeal lipid were named by a Japanese research group<ref>Nishihara M, Morii H, Koga Y (1987) "Structure determination of a quartet of novel tetraether lipids from Methanobacterium thermoautotrophicum", Journal of Biochemistry 101:1007-1015</ref>.		Much of archaeal lipid were named by a Japanese research group<ref>Nishihara M, Morii H, Koga Y (1987) "Structure determination of a quartet of novel tetraether lipids from Methanobacterium thermoautotrophicum", Journal of Biochemistry 101:1007-1015</ref>.
	\|		\|
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	\|-		\|-
	!Archaeol (= 2,3-di-O-alkyl sn-glycerol diether) [[Image:LBAA.png]]		!Archaeol (= 2,3-di-O-alkyl sn-glycerol diether) [[Image:LBAA.png]]
	\|		\|{{Twocolumn
	{{~~Bilingual\|アルキル基はC20かC25のイソプレン。Archaetidic acid はその1リン酸エステル。~~		\|The alkyl chain is either C20- or C25-isoprene. Archaetidic acid refers to its monophophate ether.
	\|		\|アルキル基はC20かC25のイソプレン。Archaetidic acid はその1リン酸エステル。
	The alkyl chain is either C20- or C25-isoprene. Archaetidic acid refers to its monophophate ether.
	}}		}}
	\|-		\|-
	!Caldarchaeol [[Image:LBAC.png]]		!Caldarchaeol [[Image:LBAC.png]]
	\|		\|{{Twocolumn
	{{Bilingual\|2分子のグリセロールがsn-2, sn-3 位でアルカンジオールとエーテル結合したテトラエーテル。超高熱菌から見出されたため cald (= hot) の名前がつく		\|An tetraether where 2 glycerol molecules are connected with 2 alkanediols at sn-2 and sn-3 positions. It was first identified from a hyperthermophil, and therefore has "cald" (i.e. hot) in its name.
	\|		\|2分子のグリセロールがsn-2, sn-3 位でアルカンジオールとエーテル結合したテトラエーテル。超高熱菌から見出されたため cald (ラテン語で「熱い」) の名前がつきます。
	An tetraether where 2 glycerol molecules are connected with 2 alkanediols at sn-2 and sn-3 positions. It was first identified from a hyperthermophil, and therefore has "cald" (=hot) in its name.
	}}		}}
	\|-		\|-
	!Isocaldarchaeol [[Image:LBAI.png]]		!Isocaldarchaeol [[Image:LBAI.png]]
	\|		\|{{Twocolumn
	{{~~Bilingual\|片方のグリセロールがCaldarchaeolと向きの違う異性体~~		\|A geometric isomer of caldarchaeol where the alkanediols connect sn-2 and sn-2 (or sn-3 and sn-3) positions.
	\|		\|片方のグリセロールがCaldarchaeolと向きの違う異性体
	A geometric isomer of caldarchaeol where the alkanediols connect sn-2 and sn-2 (or sn-3 and sn-3) positions.
	}}		}}
	\|-		\|-
	! Calditocaldarchaeol [[Image:LBAD.png]]		! Calditocaldarchaeol [[Image:LBAD.png]]
	\|		\|{{Twocolumn
	{{Bilingual\|カルジトールは水酸基を5つ有する炭素五員環がsn-1部位でグリセロールにエーテル結合した構造。以前は異なる構造が報告されており nonitol と呼ばれた時期もあった		\|Calditol refers to a 5-carbon cyclic polyol connected to sn-1 glycerol by an ether linkage. It was first identified from ''Caldariella acidophila'' (now ''Sulfolobus solfataricus'' A.T.C.C. 49155) and was called nonitol with a wrong structure. (A brief history is in Bleriot et al., 2002).<ref>Bleriot Y, Untersteller E, Fritz B, Sinay P (2002) "Total Synthesis of calditol: Structural clarification of this typical component of archaea order Sulfolobales", Chemistry, 8(1):240-246</ref>)
	\|		\|カルジトールは水酸基を5つ有する炭素五員環がsn-1部位でグリセロールにエーテル結合した構造。当初 ''Caldariella acidophila'' MT-4 (現 ''Sulfolobus solfataricus'' A.T.C.C. 49155) に見出された際に異なる構造が報告され nonitol と呼ばれた時期もありました。下のBleriotらの論文に経緯があります。
	Calditol refers to a 5-carbon cyclic polyol connected to sn-1 glycerol by an ether linkage. It was ~~once~~ called nonitol ~~and the~~ structure ~~was also considered different~~.<ref>Bleriot Y, Untersteller E, Fritz B, Sinay P "Total Synthesis of calditol: Structural clarification of this typical component of archaea order Sulfolobales", Chemistry, 8(1):240-246</ref>
	}}		}}
	\|}		\|}

← Older revision		Revision as of 06:40, 15 March 2013
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	==={{Bilingual\|系統\|Phylogeny}}===		==={{Bilingual\|系統\|Phylogeny}}===
	{{Twocolumn\|		{{Twocolumn\|
	Archaea are separated into two phyla which show three different characters (Table 1~~: leftmost column~~).		Archaea are separated into two phyla which show three different characters (Table 1).
	\|		\|
	アーキアはcrenarchaeotaとeuryarchaetaに分かれますが、		アーキアはcrenarchaeotaとeuryarchaetaに分かれますが、
	~~特徴からみると三通りになります（表の最左カラム）。~~		特徴からみると三通りになります（表1）。
	}}		}}

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	\|+ Table 1. {{Bilingual\|アーキアの分類\|Clades in Archaea}}		\|+ Table 1. {{Bilingual\|アーキアの分類\|Clades in Archaea}}
	\|-		\|-
	! ~~{{Bilingual\|特徴\|Character}} \|\|~~ Phyrum (綱) \|\| Order (目) \|\| Family (科)		! Phyrum (綱) \|\| Order (目) \|\| Family (科) \|\| {{Bilingual\|特徴\|Character}}
	\|-		\|- style="background-color:#fdd"
	~~!rowspan="5"~~\|{{Bilingual\|~~メタンを生成しない超好熱菌~~\|~~Non-methanogenic<br/>hyperthermophils~~}}		!rowspan="3"\|crenarchaeota
	\|rowspan="3"\|crenarchaeota
	\|desulfurococcales \|\| desulfurococcaceae, pyrodictiaceae		\|desulfurococcales \|\| desulfurococcaceae, pyrodictiaceae
	\|-		\|rowspan="5"\|{{Bilingual\|メタンを生成しない超好熱菌\|Non-methanogenic<br/>(hyper) thermophils}}
			\|- style="background-color:#fdd"
	\|sulfolobales \|\| sulfolobaceae		\|sulfolobales \|\| sulfolobaceae
	\|-		\|- style="background-color:#fdd"
	\|thermoproteales \|\| thermoproteaceae		\|thermoproteales \|\| thermoproteaceae
	\|-		\|- style="background-color:#fdd"
	\|rowspan="8"\|euryarchaeota		!rowspan="8"\|euryarchaeota
	\|thermococcales \|\| thermococcaceae		\|thermococcales \|\| thermococcaceae
	\|-		\|- style="background-color:#fdd"
	\|thermoplasmatales \|\| thermoplasmataceae		\|thermoplasmatales \|\| thermoplasmataceae
	\|-		\|- style="background-color:#ddf"
	~~!{{Bilingual\|高度好塩菌\|Halophils}}~~
	\|halobacteriales \|\| halobacteriaceae		\|halobacteriales \|\| halobacteriaceae
			\|{{Bilingual\|高度好塩菌\|Halophils}}
	\|-		\|-
	~~!rowspan="5"\|{{Bilingual\|メタン生成菌\|Methanogens}}~~
	\|methanobacteriales \|\| methanobacteriaceae, methanothermaceae		\|methanobacteriales \|\| methanobacteriaceae, methanothermaceae
			\|rowspan="5"\|{{Bilingual\|メタン生成菌\|Methanogens}}
	\|-		\|-
	\| methanococcales \|\| methanococcaceae, methanocaldococcaceae		\| methanococcales \|\| methanococcaceae, methanocaldococcaceae