https://lipidbank.jp/mediawiki/index.php?action=history&feed=atom&title=MediaWiki%3AJBrowse.jsMediaWiki:JBrowse.js - Revision history2026-05-31T00:18:54ZRevision history for this page on the wikiMediaWiki 1.43.0https://lipidbank.jp/mediawiki/index.php?title=MediaWiki:JBrowse.js&diff=81817&oldid=prevJcblmaster: Created page with "var baseUrl = "/jbrowse/JBrowse/"; // 最初にdojo.jsを属性付きで読み込む var dojoScript = document.createElement('script'); dojoScript.type = 'text/javascript'; ..."2014-03-26T07:26:52Z<p>Created page with "var baseUrl = "/jbrowse/JBrowse/"; // 最初にdojo.jsを属性付きで読み込む var dojoScript = document.createElement('script'); dojoScript.type = 'text/javascript'; ..."</p>
<p><b>New page</b></p><div>var baseUrl = "/jbrowse/JBrowse/";<br />
<br />
// 最初にdojo.jsを属性付きで読み込む<br />
var dojoScript = document.createElement('script');<br />
dojoScript.type = 'text/javascript';<br />
dojoScript.src = baseUrl+'/src/dojo/dojo.js'<br />
dojoScript.setAttribute("data-dojo-config", "async: 1, baseUrl: baseUrl+'src'");<br />
var css = document.getElementsByTagName( 'link' )[0];<br />
css.parentNode.appendChild(dojoScript, css);<br />
<br />
// dojo.jsの読み込み完了後、init.jsを読み込む<br />
dojoScript.onload = function(){<br />
var initScript = document.createElement('script');<br />
initScript.type = 'text/javascript';<br />
initScript.src = baseUrl+'/src/JBrowse/init.js';<br />
dojoScript.parentNode.appendChild(initScript, dojoScript);<br />
<br />
<br />
// init.jsの読み込み完了後、初期化を行う<br />
initScript.onload = function(){<br />
window.onerror=function(msg){<br />
if( document.body )<br />
document.body.setAttribute("JSError",msg);<br />
}<br />
<br />
// puts the main Browser object in this for convenience. feel<br />
// free to move it into function scope if you want to keep it<br />
// out of the global namespace<br />
var JBrowse;<br />
require(['JBrowse/Browser', 'dojo/io-query', 'dojo/json' ],<br />
function (Browser,ioQuery,JSON) {<br />
// the initial configuration of this JBrowse<br />
// instance<br />
<br />
// NOTE: this initial config is the same as any<br />
// other JBrowse config in any other file. this<br />
// one just sets defaults from URL query params.<br />
// If you are embedding JBrowse in some other app,<br />
// you might as well just set this initial config<br />
// to something like { include: '../my/dynamic/conf.json' },<br />
// or you could put the entire<br />
// dynamically-generated JBrowse config here.<br />
<br />
// parse the query vars in the page URL<br />
var queryParams = ioQuery.queryToObject( window.location.search.slice(1) );<br />
<br />
var config = {<br />
containerID: "GenomeBrowser",<br />
sourceUrl: baseUrl,<br />
browserRoot: baseUrl, <br />
dataRoot: queryParams.data,<br />
queryParams: queryParams,<br />
location: queryParams.loc,<br />
forceTracks: queryParams.tracks,<br />
initialHighlight: queryParams.highlight,<br />
show_nav: queryParams.nav,<br />
show_tracklist: queryParams.tracklist,<br />
show_overview: queryParams.overview,<br />
stores: { url: { type: "JBrowse/Store/SeqFeature/FromConfig", features: [] } },<br />
makeFullViewURL: function( browser ) {<br />
<br />
// the URL for the 'Full view' link<br />
// in embedded mode should be the current<br />
// view URL, except with 'nav', 'tracklist',<br />
// and 'overview' parameters forced to 1.<br />
<br />
return browser.makeCurrentViewURL({ nav: 1, tracklist: 1, overview: 1 });<br />
},<br />
updateBrowserURL: true<br />
};<br />
<br />
//if there is ?addFeatures in the query params,<br />
//define a store for data from the URL<br />
if( queryParams.addFeatures ) {<br />
config.stores.url.features = JSON.parse( queryParams.addFeatures );<br />
}<br />
<br />
// if there is ?addTracks in the query params, add<br />
// those track configurations to our initial<br />
// configuration<br />
if( queryParams.addTracks ) {<br />
config.tracks = JSON.parse( queryParams.addTracks );<br />
}<br />
<br />
// if there is ?addStores in the query params, add<br />
// those store configurations to our initial<br />
// configuration<br />
if( queryParams.addStores ) {<br />
config.stores = JSON.parse( queryParams.addStores );<br />
}<br />
// create a JBrowse global variable holding the JBrowse instance<br />
JBrowse = new Browser( config );<br />
});<br />
}<br />
}</div>Jcblmaster