Template:JAS/MutationStat - Revision history

Editor at 02:34, 31 January 2023

2023-01-31T02:34:03Z

@@ Line 4: / Line 4: @@
 |+ The number of mutations <small>(E = exon; I = intron)</small>
+|
-{{#lua:
+{{#invoke:JAS|NumberOfMutations|{{#var:list}} }}
 |}
@@ Line 41: / Line 10: @@
 |+ The type of mutations
+|
-{{#lua:
+{{#invoke:JAS|TypeOfMutations|{{#var:list}}|{{{1|LDLR}}}}}
 |}
 </center>

2012-07-22T19:20:10Z

← Older revision		Revision as of 04:20, 23 July 2012
Line 34:		Line 34:
	SortAndPrint("I", inn)		SortAndPrint("I", inn)
	SortAndPrint("", etc)		SortAndPrint("", etc)
	print("Total<br/>" .. total)		print("<b>Total</b><br/>" .. total)
	\|{{#var:list}} }}		\|{{#var:list}} }}
	\|}		\|}
Line 55:		Line 55:
	end		end
	print("Single-nucleotide<br/>mutation<br/>" .. M .. "\n{{#bar:}}Deletion<br/>" .. D .. "\n{{#bar:}}Insertion<br/>" .. I .. "\n{{#bar:}}Del&Ins<br/>" .. DI .. "\n{{#bar:}}Duplication<br/>" .. U .. "\n{{#bar:}}Others<br/>" .. O)		print("Single-nucleotide<br/>mutation<br/>" .. M .. "\n{{#bar:}}Deletion<br/>" .. D .. "\n{{#bar:}}Insertion<br/>" .. I .. "\n{{#bar:}}Del&Ins<br/>" .. DI .. "\n{{#bar:}}Duplication<br/>" .. U .. "\n{{#bar:}}Others<br/>" .. O)
	print("\n{{#bar:}}Total<br/>" .. total)		print("\n{{#bar:}}<b>Total</b><br/>" .. total)
	\|{{#var:list}} }}		\|{{#var:list}} }}
	\|}		\|}
	</center>		</center>

2012-07-20T02:58:03Z

← Older revision		Revision as of 11:58, 20 July 2012
Line 54:		Line 54:
	end		end
	end		end
	print("Single-nucleotide<br/>mutation<br/>" .. M .. "\n{{#bar:}}Deletion<br/>" .. D .. "\n{{#bar:}}Insertion<br/>" .. I .. "\n{{#bar:}}Del&Ins<br/>" .. DI .. "\n{{#bar:}}~~Dup~~<br/>" .. U .. "\n{{#bar:}}Others<br/>" .. O)		print("Single-nucleotide<br/>mutation<br/>" .. M .. "\n{{#bar:}}Deletion<br/>" .. D .. "\n{{#bar:}}Insertion<br/>" .. I .. "\n{{#bar:}}Del&Ins<br/>" .. DI .. "\n{{#bar:}}Duplication<br/>" .. U .. "\n{{#bar:}}Others<br/>" .. O)
	print("\n{{#bar:}}Total<br/>" .. total)		print("\n{{#bar:}}Total<br/>" .. total)
	\|{{#var:list}} }}		\|{{#var:list}} }}
	\|}		\|}
	</center>		</center>

2012-07-20T02:47:08Z

← Older revision		Revision as of 11:47, 20 July 2012
Line 1:		Line 1:
	{{#def:list\|{{#SearchLine:{{{1\|LDLR}}}/_%\|JASReference}}}}		{{#def:list\|{{#SearchLine:&&{{{1\|LDLR}}}/\|JASReference}}}}
	<center>		<center>
	{\| class="wikitable" style="text-align:center;width:100%"		{\| class="wikitable" style="text-align:center;width:100%"
Line 44:		Line 44:
	local M=0 D=0 I=0 DI=0 O=0 U=0		local M=0 D=0 I=0 DI=0 O=0 U=0
	local total =0		local total =0
	for type in stdin:gmatch("&&{{{1}}}/(%w+)/") do		for type in stdin:gmatch("&&{{{1\|LDLR}}}/(%w+)/%S+\n") do
	total = total+1		total = total+1
	if (string.match(type,"Mut")) then M = M+1		if (string.match(type,"Mut")) then M = M+1
			elseif (string.match(type,"DelIns")) then DI = DI+1
	elseif (string.match(type,"Ins")) then I = I+1		elseif (string.match(type,"Ins")) then I = I+1
	elseif (string.match(type,"Del")) then D = D+1		elseif (string.match(type,"Del")) then D = D+1
	~~elseif (string.match(type,"DelIns")) then DI = DI+1~~
	elseif (string.match(type,"Dup")) then U = U+1		elseif (string.match(type,"Dup")) then U = U+1
	else O = O+1		else O = O+1

2012-07-19T23:43:16Z

← Older revision		Revision as of 08:43, 20 July 2012
Line 44:		Line 44:
	local M=0 D=0 I=0 DI=0 O=0 U=0		local M=0 D=0 I=0 DI=0 O=0 U=0
	local total =0		local total =0
	for type in stdin:gmatch("&&{{{1}}}/(%w+)/~~[%S ]+\n~~") do		for type in stdin:gmatch("&&{{{1}}}/(%w+)/") do
	total = total+1		total = total+1
	if (string.match(type,"Mut")) then M = M+1		if (string.match(type,"Mut")) then M = M+1

2012-07-19T23:42:35Z

← Older revision		Revision as of 08:42, 20 July 2012
Line 44:		Line 44:
	local M=0 D=0 I=0 DI=0 O=0 U=0		local M=0 D=0 I=0 DI=0 O=0 U=0
	local total =0		local total =0
	for type in stdin:gmatch("&&{{{1}}}/(%w+)/[%S]+\n") do		for type in stdin:gmatch("&&{{{1}}}/(%w+)/[%S ]+\n") do
	total = total+1		total = total+1
	if (string.match(type,"Mut")) then M = M+1		if (string.match(type,"Mut")) then M = M+1

2012-07-19T23:35:42Z

← Older revision		Revision as of 08:35, 20 July 2012
Line 44:		Line 44:
	local M=0 D=0 I=0 DI=0 O=0 U=0		local M=0 D=0 I=0 DI=0 O=0 U=0
	local total =0		local total =0
	for type in stdin:gmatch("&&{{{1}}}/(%w+)/%S+\n") do		for type in stdin:gmatch("&&{{{1}}}/(%w+)/[%S]+\n") do
	total = total+1		total = total+1
	if (string.match(type,"Mut")) then M = M+1		if (string.match(type,"Mut")) then M = M+1

2012-07-19T23:34:44Z

← Older revision		Revision as of 08:34, 20 July 2012
Line 1:		Line 1:
	{{#def:list\|{{#SearchLine:{{{1}}}/_%\|JASReference}}}}		{{#def:list\|{{#SearchLine:{{{1\|LDLR}}}/_%\|JASReference}}}}
	<center>		<center>
	{\| class="wikitable" style="text-align:center;width:100%"		{\| class="wikitable" style="text-align:center;width:100%"
Line 44:		Line 44:
	local M=0 D=0 I=0 DI=0 O=0 U=0		local M=0 D=0 I=0 DI=0 O=0 U=0
	local total =0		local total =0
	for type in stdin:gmatch("&&{{{1}}}/(%w+)/%x+\n") do		for type in stdin:gmatch("&&{{{1}}}/(%w+)/%S+\n") do
	total = total+1		total = total+1
	if (string.match(type,"Mut")) then M = M+1		if (string.match(type,"Mut")) then M = M+1

2012-07-19T22:50:09Z

← Older revision		Revision as of 07:50, 20 July 2012
Line 30:		Line 30:
	if (etc[gene] == nil) then etc[gene] = 1 else etc[gene] = etc[gene]+1 end		if (etc[gene] == nil) then etc[gene] = 1 else etc[gene] = etc[gene]+1 end
	end		end
	~~print(gene)~~
	end		end
	SortAndPrint("E", exn)		SortAndPrint("E", exn)
Line 45:		Line 44:
	local M=0 D=0 I=0 DI=0 O=0 U=0		local M=0 D=0 I=0 DI=0 O=0 U=0
	local total =0		local total =0
	for type in stdin:gmatch("&&{{{1}}}/(%w+)/%S+\n") do		for type in stdin:gmatch("&&{{{1}}}/(%w+)/%x+\n") do
	total = total+1		total = total+1
	if (string.match(type,"Mut")) then M = M+1		if (string.match(type,"Mut")) then M = M+1

2012-07-19T22:45:40Z

← Older revision		Revision as of 07:45, 20 July 2012
Line 30:		Line 30:
	if (etc[gene] == nil) then etc[gene] = 1 else etc[gene] = etc[gene]+1 end		if (etc[gene] == nil) then etc[gene] = 1 else etc[gene] = etc[gene]+1 end
	end		end
			print(gene)
	end		end
	SortAndPrint("E", exn)		SortAndPrint("E", exn)