Category:LBS/Search: Difference between revisions

Revision as of 04:46, 31 May 2017

{{#includejs:LBSSearch.js}} {{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}} {{#includejs:GlycosphingolipidMassCalculator.js}} {{#includejs:AdvancedLBSSearch.js}}

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Search From Mass

Mass calculator

Formula

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Precursor Mass (polysaccharide part) → Product Masses (comma separated) (tolerance )

Glycosphingolipid Mass Calculator

Mass	Nominal Mass	Formula

Carbohydrates

Hexose

HexNAc

NeuAc

NeuGc

Fucose

HexA

Fatty Acids

Carbon No.

Unsaturation

Hydroxy group

Polarity

Charge

Long Chain Bases

Carbon No.

Unsaturation

Hydroxy group

Adduct Ions

Na

K

Ca

Modification

Sulfate

Phosphate

Methyl

Acetyl

N-Methylamide

Lactone

Search from Structure

Search by Sphingolipid Major Series
Search by Specific Sugars

Search from the non-reducing end pattern (click "Show" to expand the table)

Name	Structure
1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group A	GalNAc_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group B	Gal_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3GlcNAcb1-3\|Blood group H	Fuc_α1-2Gal_β1-3GlcNAc_β1-3-R
1=Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^a	Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^b	Fuc_α1-2Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3\|sialyl-Lewis^a	NeuAc_α2-3Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^x, SSEA-1	Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^y	Fuc_α1-2Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3\|sialyl-Lewis ^x	NeuAc_α2-3Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1\|Forssman antigen	GalNAc_α1-3GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R
1=Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1\|P antigen	GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R

Search from the polysaccharide sequence

-

Polysaccharide sequence (Advanced)

{{#persist:ListMainchain|List mainchain|ListMainchain|0|dummy|;}}

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@@ Line 27: / Line 27: @@
 {{#formtag:fieldset||
-{{#formtag:legend||Precursor Mass (polysaccharide part only)}}
+{{#formtag:legend||Precursor Mass (polysaccharide part)}}
 {{#formtag:input|name="prec_mass" id="prec_mass" type="text" size="10" value="500"}}
 {{#formtag:legend|| &rarr; Product Masses (comma separated)}}
@@ Line 53: / Line 53: @@
    <td colspan="5">
     <table style="text-align: center; font-weight: 600">
-     <tr><td style="border: none">{{#formtag:select|name="cs_average" id="cs_average"|{{#formtag:option|value="true"|Average}}{{#formtag:option|value="false"|Exact}} }} Mass</td><td style="border: none">Nominal Mass</td><td style="border: none">Formula</td></tr>
+     <tr><td style="border: none">{{#formtag:select|name="cs_average" id="cs_average"|{{#formtag:option|value="true"|Average}}{{#formtag:option|value="false"|Exact}} }} Mass</td><td style="border: none">Nominal Mass</td><td style="border: none">Formula</td><td style="border: none"></td></tr>
-     <tr><td style="border: none">{{#formtag:input|type="text" id="cs_mass" style="width: 12em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_nominalmass" style="width: 6em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_formula" style="width: 14em"}}</td></tr>
+     <tr><td style="border: none">{{#formtag:input|type="text" id="cs_mass" style="width: 12em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_nominalmass" style="width: 6em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_formula" style="width: 10em"}}</td><td style="border: none">{{#formtag:input|type="button" value="calculate" id="calculate_glycosphingolipid_button"}}</td></tr>
     </table>
    </td>
@@ Line 67: / Line 67: @@
   <tr style="background-color: #ffcccc">
    <td>Fucose<br />{{#formtag:input|type="number" min="0" value="0" id="cs_fucose" style="width: 3em"}}</td>
-   <td>HexUA<br />{{#formtag:input|type="number" min="0" value="0" id="cs_hexua"  style="width: 3em"}}</td>
+   <td>HexA<br />{{#formtag:input|type="number" min="0" value="0" id="cs_hexua"  style="width: 3em"}}</td>
    <td></td>
    <td></td>
@@ Line 102: / Line 102: @@
    <td>Lactone<br />{{#formtag:input|type="number" min="0" value="0" id="cs_lactone" style="width: 3em"}}</td>
    <td></td>
-   <td style="background-color: #ffffff">{{#formtag:input|type="button" value="calculate" id="calculate_glycosphingolipid_button"}}</td>
+   <td></td>
   </tr>
 </table>

Category:LBS/Search: Difference between revisions

Revision as of 04:46, 31 May 2017

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