Category:LBS/Search: Difference between revisions

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<span style="color: red; font-size: x-large">under construction</span>
<span style="color: red; font-size: x-large">under construction</span>


{| style="float:right"
<!--DEFINITIONS-->
| __TOC__
{{#def:Hexose|Glc..-.~Galf?..-[1-9/]+~Man..-.}}
|}
{{#def:HexNAc|GlcNAc([1-6]Me)?..-.~GalNAc([1-6]Me)?..-.}}
{{#def:HexA|GlcA([1-6]Me)?..-.|GalA([1-6]Me)?..-.}}
{{#def:Fucose|([1-6]-Deoxy-)?Fuc([1-6]Me)?
{{def:NeuAc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuAc([1-9]Me|[1-9]Methoxy)?}}
{{def:NeuGc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuGc([1-9]Me|[1-9]Methoxy)?}}
 
==Search from Structure==
 
<!--
{{#formtag:fieldset||
{{#formtag:legend||Sphingolipid Major Series}}
<table>
<tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Gala</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Spirometo</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Ganglio</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Isoganglio</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Lactoganglio</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Ganglio a-series</label></td>
</tr>
<tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">SM/CPE/CAEP</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Spirometo</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC GlcN</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC GlcA</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC Man</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Others</label></td>
</tr>
</table>
}}
-->
 
<div style="margin-left: 1.5em">
[[:Category:LBS#Sphingolipid_.E3.82.B9.E3.83.95.E3.82.A3.E3.83.B3.E3.82.B4.E8.84.82.E8.B3.AA|Search by Sphingolipid Major Series]]<br />
[[:Category:LBS#Second_.28s2.29_Code_for_subsequent_sugars|Search by Specific Sugars]]<br />
</div>
 
{{#formtag:fieldset||
{{#formtag:legend||Search from the non-reducing end pattern (click "Show" to expand the table)}}
}}
<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
<tr><th>Name</th><th>Structure</th></tr>
 
<tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group A]]</td><td>{{LBS/FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group B]]</td>  <td>{{LBS/FormatSugar|Gala1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-3GlcNAcb1-3|Blood group H]]</td>              <td>{{LBS/FormatSugar|Fuca1-2Galb1-3GlcNAcb1-3-R}}</td></tr>
 
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3|Lewis <sup>a</sup>]]</td>                <td>{{LBS/FormatSugar|Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3|Lewis <sup>b</sup>]]</td>        <td>{{LBS/FormatSugar|Fuca1-2Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3|sialyl-Lewis<sup>a</sup>]]</td> <td>{{LBS/FormatSugar|NeuAca2-3Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
 
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3|Lewis <sup>x</sup>, SSEA-1]]</td>        <td>{{LBS/FormatSugar|Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3|Lewis <sup>y</sup>]]</td>        <td>{{LBS/FormatSugar|Fuca1-2Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3|sialyl-Lewis <sup>x</sup>]]</td><td>{{LBS/FormatSugar|NeuAca2-3Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
 
<tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1|Forssman antigen]]</td>      <td>{{LBS/FormatSugar|GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
 
<tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1|P antigen]]</td>                        <td>{{LBS/FormatSugar|GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
</table>
 
{{#formtag:fieldset||
{{#formtag:legend||Search from the polysaccharide sequence}}
<table>
<tr>
  <td>{{#formtag:select|name="nre" id="nre"|<option value="">(Non-reducing end)</option><option value=".*" selected="yes">(any)</option>}}</td>
  <td>{{#formtag:select|name="4th" id="4th"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-.">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-.">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="Neu[AG]c[1-9]?α2-.">NeuAc/NeuGc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="3rd" id="3th"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-.">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-." selected="yes">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="Neu[AG]c[1-9]?α2-.">NeuAc/NeuGc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="2nd" id="2nd"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-." selected="yes">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-.">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="NeuAc[1-9]?α2-.">NeuAc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="1st" id="1st"|<option value="Gala[1-9]?-">Galα-</option><option value="Galb[1-9]?-">Galβ-</option><option value="Glcb.-" selected="yes">Glcβ-</option><option value="NeuAc..-">NeuAc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="re"  id="re" |<option value="(Cer~Sph)">Cer/Sph</option><option value=".+">(any)</option>}}</td>
</tr>
</table>
{{#formtag:input|name="cals" type="button" value="SEARCH" id="mainchain"}}
}}
 
{{#formtag:fieldset||
{{#formtag:legend||Polysaccharide sequence (Advanced)}}
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
{{#formtag:input|type="button" id="advanced_search_button" value="SEARCH"}}<br />
{{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}}
}}
{{#persist:ListMainchain|List mainchain|ListMainchain|0|dummy|;}}
 
{{#formtag:fieldset||
{{#formtag:legend||Display setting}}
<table>
<tr>
  <td>limit/page</td>
  <td>{{#formtag:select|name="limit_page"|<option>10</option><option>50</option><option>100</option>}}</td>
  <td>order</td>
  <td>{{#formtag:select|name="table_id"|<option>lipidbank id</option><option>compound name</option>}} {{#formtag:select|name="sort"|<option>ascending</option><option>descending</option>}}</td>
</tr>
</table>
}}


==Search From Mass==
==Search From Mass==
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  </tr>
  </tr>
</table>
</table>
==Search from Structure==
<!--
{{#formtag:fieldset||
{{#formtag:legend||Sphingolipid Major Series}}
<table>
<tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Gala</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Spirometo</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Ganglio</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Isoganglio</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Lactoganglio</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Ganglio a-series</label></td>
</tr>
<tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">SM/CPE/CAEP</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Spirometo</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC GlcN</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC GlcA</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC Man</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Others</label></td>
</tr>
</table>
}}
-->
<div style="margin-left: 1.5em">
[[:Category:LBS#Sphingolipid_.E3.82.B9.E3.83.95.E3.82.A3.E3.83.B3.E3.82.B4.E8.84.82.E8.B3.AA|Search by Sphingolipid Major Series]]<br />
[[:Category:LBS#Second_.28s2.29_Code_for_subsequent_sugars|Search by Specific Sugars]]<br />
</div>
{{#formtag:fieldset||
{{#formtag:legend||Search from the non-reducing end pattern (click "Show" to expand the table)}}
}}
<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
<tr><th>Name</th><th>Structure</th></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group A]]</td><td>{{LBS/FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group B]]</td>  <td>{{LBS/FormatSugar|Gala1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-3GlcNAcb1-3|Blood group H]]</td>              <td>{{LBS/FormatSugar|Fuca1-2Galb1-3GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3|Lewis <sup>a</sup>]]</td>                <td>{{LBS/FormatSugar|Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3|Lewis <sup>b</sup>]]</td>        <td>{{LBS/FormatSugar|Fuca1-2Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3|sialyl-Lewis<sup>a</sup>]]</td> <td>{{LBS/FormatSugar|NeuAca2-3Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3|Lewis <sup>x</sup>, SSEA-1]]</td>        <td>{{LBS/FormatSugar|Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3|Lewis <sup>y</sup>]]</td>        <td>{{LBS/FormatSugar|Fuca1-2Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3|sialyl-Lewis <sup>x</sup>]]</td><td>{{LBS/FormatSugar|NeuAca2-3Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1|Forssman antigen]]</td>      <td>{{LBS/FormatSugar|GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1|P antigen]]</td>                        <td>{{LBS/FormatSugar|GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
</table>
{{#formtag:fieldset||
{{#formtag:legend||Search from the polysaccharide sequence}}
<table>
<tr>
  <td>{{#formtag:select|name="nre" id="nre"|<option value="">(Non-reducing end)</option><option value=".*" selected="yes">(any)</option>}}</td>
  <td>{{#formtag:select|name="4th" id="4th"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-.">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-.">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="Neu[AG]c[1-9]?α2-.">NeuAc/NeuGc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="3rd" id="3th"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-.">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-." selected="yes">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="Neu[AG]c[1-9]?α2-.">NeuAc/NeuGc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="2nd" id="2nd"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-." selected="yes">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-.">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="NeuAc[1-9]?α2-.">NeuAc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="1st" id="1st"|<option value="Gala[1-9]?-">Galα-</option><option value="Galb[1-9]?-">Galβ-</option><option value="Glcb.-" selected="yes">Glcβ-</option><option value="NeuAc..-">NeuAc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="re"  id="re" |<option value="(Cer~Sph)">Cer/Sph</option><option value=".+">(any)</option>}}</td>
</tr>
</table>
{{#formtag:input|name="cals" type="button" value="SEARCH" id="mainchain"}}
}}
{{#formtag:fieldset||
{{#formtag:legend||Polysaccharide sequence (Advanced)}}
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
{{#formtag:input|type="button" id="advanced_search_button" value="SEARCH"}}<br />
{{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}}
}}
{{#persist:ListMainchain|List mainchain|ListMainchain|0|dummy|;}}
{{#formtag:fieldset||
{{#formtag:legend||Display setting}}
<table>
<tr>
  <td>limit/page</td>
  <td>{{#formtag:select|name="limit_page"|<option>10</option><option>50</option><option>100</option>}}</td>
  <td>order</td>
  <td>{{#formtag:select|name="table_id"|<option>lipidbank id</option><option>compound name</option>}} {{#formtag:select|name="sort"|<option>ascending</option><option>descending</option>}}</td>
</tr>
</table>
}}

Revision as of 03:05, 22 November 2017

{{#includejs:LBSSearch.js}} {{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}} {{#includejs:GlycosphingolipidMassCalculator.js}} {{#includejs:AdvancedLBSSearch.js}}

under construction



{{#def:Fucose|([1-6]-Deoxy-)?Fuc([1-6]Me)? Template:Def:NeuAc Template:Def:NeuGc

Search from Structure

Search from the non-reducing end pattern (click "Show" to expand the table)

Search from the polysaccharide sequence

- - - -

Polysaccharide sequence (Advanced)

{{#persist:ListMainchain|List mainchain|ListMainchain|0|dummy|;}}

Display setting

limit/page order

Search From Mass

Mass calculator

Formula
 
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Precursor Mass (polysaccharide part only) → Product Masses (comma separated)    (tolerance )

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