Category:LBS/Search: Difference between revisions

Revision as of 22:18, 30 November 2017

{{#includejs:LBSSearch.js}} {{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}} {{#includejs:GlycosphingolipidMassCalculator.js}} {{#includejs:AdvancedLBSSearch.js}} under construction

Search from Structure

Search from Sphingolipid Major Series
Search from Specific Sugars

Search from the non-reducing end pattern (click "Show" to expand the table)

Name	Structure
1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group A	GalNAc_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group B	Gal_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3GlcNAcb1-3\|Blood group H	Fuc_α1-2Gal_β1-3GlcNAc_β1-3-R
1=Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^a	Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^b	Fuc_α1-2Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3\|sialyl-Lewis^a	NeuAc_α2-3Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^x, SSEA-1	Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^y	Fuc_α1-2Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3\|sialyl-Lewis ^x	NeuAc_α2-3Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1\|Forssman antigen	GalNAc_α1-3GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R
1=Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1\|P antigen	GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R

Search from the polysaccharide sequence

-

Advanced keyword search
Non-reducing end

All Polysaccharide Sequences

{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}}

Search From Mass

Mass calculator

Formula

→

Precursor Mass (polysaccharide part only) → Product Masses (comma separated) (tolerance )

Glycosphingolipid Mass Calculator for MS Analysis

Exact Mass	Nominal Mass	Formula

Carbohydrates

Hexose

HexNAc

NeuAc

NeuGc

Fucose

HexA

Fatty Acids

Carbon No.

Unsaturation

Hydroxy group

Polarity

Long Chain Bases

Carbon No.

Unsaturation

Hydroxy group

Adduct Ions

Na

K

Ammonium

Modification

Sulfate

Phosphate

Methyl

Acetyl

Lactone

}}

Display setting

limit/page

order

This category currently contains no pages or media.

@@ Line 4: / Line 4: @@
 {{#includejs:AdvancedLBSSearch.js}}
 <span style="color: red; font-size: x-large">under construction</span>
-<!--DEFINITIONS--> {{#def:Hexose|((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*}} {{#def:HexNAc|((GlcNAc)~(GalNAc))[-abfp0-9]*}} {{#def:HexA|((GlcA)~(GalA))[-abfp0-9]*}} {{#def:Fucose|([1-6]-Deoxy-)?Fuc([1-6]Me)?}} {{#def:NeuAc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuAc([1-9]Me|[1-9]Methoxy)?}} {{#def:NeuGc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuGc([1-9]Me|[1-9]Methoxy)?}}
+<!--DEFINITIONS--> {{#def:Hexose|((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*}} {{#def:HexNAc| ((GlcNAc)~(GalNAc))[-abfp0-9]* }} {{#def:HexA|((GlcA)~(GalA))[-abfp0-9]* }} {{#def:Fucose| ([1-6]-Deoxy-)?Fuc([1-6]Me)? }} {{#def:NeuAc| ([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuAc([1-9]Me|[1-9]Methoxy)?}} {{#def:NeuGc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuGc([1-9]Me|[1-9]Methoxy)?}}
 ==Search from Structure==
 <ul>
@@ Line 36: / Line 36: @@
   <tr>
    <td>{{#formtag:select|name="nre" id="nre"|<option value="">(Non-reducing end)</option><option value=".*" selected="yes">(any)</option>}}</td>
-   <td>{{#formtag:select|name="4th" id="4th"|<option value="{{#var:Hexose}}">Hexose</option><option value="{{#var:HexNAc}}">HexNAc</option><option value="{{#var:HexA}}">HexA</option><option value="{{#var:Fucose}}">Fucose</option><option value="{{#var:NeuAc}}">NeuAc</option><option value="{{#var:NeuGc}"}>NeuGc</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
+   <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*-.">Hexose</option><option value="((GlcNAc)~(GalNAc))[-abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[-abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">(none)</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="3rd" id="3rd"|<option value="{{#var:Hexose}}">Hexose</option><option value="{{#var:HexNAc}}">HexNAc</option><option value="{{#var:HexA}}">HexA</option><option value="{{#var:Fucose}}">Fucose</option><option value="{{#var:NeuAc}}" selected="yes">NeuAc</option><option value="{{#var:NeuGc}"}>NeuGc</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
+   <td>{{#formtag:select|name="3th" id="3th"|<option value="((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*-.">Hexose</option><option value="((GlcNAc)~(GalNAc))[-abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[-abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-." selected="yes">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">(none)</option>}}</td>
-  <td>-</td>
-  <td>{{#formtag:select|name="2nd" id="2nd"|<option value="{{#var:Hexose}}" selected="yes">Hexose</option><option value="{{#var:HexNAc}}">HexNAc</option><option value="{{#var:HexA}}">HexA</option><option value="{{#var:Fucose}}">Fucose</option><option value="{{#var:NeuAc}}">NeuAc</option><option value="{{#var:NeuGc}"}>NeuGc</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="1st" id="1st"|<option value="{{#var:Hexose}}" selected="yes">Hexose</option><option value="{{#var:HexNAc}}">HexNAc</option><option value="{{#var:HexA}}">HexA</option><option value="{{#var:Fucose}}">Fucose</option><option value="{{#var:NeuAc}}">NeuAc</option><option value="{{#var:NeuGc}"}>NeuGc</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
+   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*-." selected="yes">Hexose</option><option value="((GlcNAc)~(GalNAc))[-abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[-abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">(none)</option>}}</td>
+<td>-</td>
+  <td>{{#formtag:select|name="1st" id="1st"|<option value="((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*-." selected="yes">Hexose</option><option value="((GlcNAc)~(GalNAc))[-abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[-abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">(none)</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="re"  id="re" |<option value="(Cer~Sph)">Cer/Sph</option><option value=".+">(any)</option>}}</td>
+   <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)~(Sph))">Cer/Sph</option><option value=".+">(any)</option>}}</td>
    <td>&nbsp;</td>
    <td>{{#formtag:input|name="cals" type="button" value="SEARCH" id="mainchain"}}</td>
@@ Line 162: / Line 163: @@
   </tr>
 </table>
+}}
 {{#formtag:fieldset||

Category:LBS/Search: Difference between revisions

Revision as of 22:18, 30 November 2017

Search from Structure

All Polysaccharide Sequences

Search From Mass

Navigation

Tools