Category:LBS/Search: Difference between revisions

Revision as of 02:06, 5 December 2017

{{#includejs:LBSSearch.js}} {{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}} {{#includejs:GlycosphingolipidMassCalculator.js}} {{#includejs:AdvancedLBSSearch.js}}

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Search from the non-reducing end pattern (click "Show" to expand the table)

Name	Structure
1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group A	GalNAc_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group B	Gal_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3GlcNAcb1-3\|Blood group H	Fuc_α1-2Gal_β1-3GlcNAc_β1-3-R
1=Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^a	Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^b	Fuc_α1-2Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3\|sialyl-Lewis^a	NeuAc_α2-3Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^x, SSEA-1	Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^y	Fuc_α1-2Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3\|sialyl-Lewis ^x	NeuAc_α2-3Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1\|Forssman antigen	GalNAc_α1-3GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R
1=Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1\|P antigen	GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R

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Glycosphingolipid Mass Calculator for MS Analysis

Exact Mass	Nominal Mass	Formula

Carbohydrates

Hexose

HexNAc

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Fatty Acids

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@@ Line 33: / Line 33: @@
 <table>
   <tr>
-   <td>{{#formtag:select|name="nre" id="nre"|<option value="">(Non-reducing end)</option><option value=".*" selected="yes">(any)</option>}}</td>
+   <td>{{#formtag:select|name="nre" id="nre" |<option value="([]~\()">NR end</option><option value=".*" selected="yes">any</option>}}</td>
-   <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*-.">Hexose</option><option value="((GlcNAc)~(GalNAc))[-abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[-abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">(none)</option>}}</td>
+   <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)~(Gal)~(Man)~(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)~(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">none</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="3th" id="3th"|<option value="((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*-.">Hexose</option><option value="((GlcNAc)~(GalNAc))[-abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[-abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-." selected="yes">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">(none)</option>}}</td>
+   <td>{{#formtag:select|name="3rd" id="3rd"|<option value="((Glc)~(Gal)~(Man)~(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)~(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-." selected="yes">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">none</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*-." selected="yes">Hexose</option><option value="((GlcNAc)~(GalNAc))[-abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[-abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">(none)</option>}}</td>
+   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="((Glc)~(Gal)~(Man)~(Ino))[abfp0-9]*-." selected="yes">Hexose</option><option value="((GlcNAc)~(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)~(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">none</option>}}</td>
 <td>-</td>
-   <td>{{#formtag:select|name="1st" id="1st"|<option value="((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*-" selected="yes">Hexose</option><option value="((GlcNAc)~(GalNAc))[-abfp0-9]*-">HexNAc</option><option value="((GlcA)~(GalA))[-abfp0-9]*-">HexA</option><option value="[^-]*Fuc[^-]*-">Fucose</option><option value="[^-]*NeuAc[^-]*-">NeuAc</option><option value="[^-]*NeuGc[^-]*-">NeuGc</option><option value="[^-]*-">Others</option><option value="">(none)</option>}}</td>
+   <td>{{#formtag:select|name="1st" id="1st"|<option value="((Glc)~(Gal)~(Man)~(Ino))[abfp0-9]*-" selected="yes">Hexose</option><option value="((GlcNAc)~(GalNAc))[abfp0-9]*-">HexNAc</option><option value="((GlcA)~(GalA))[abfp0-9]*-">HexA</option><option value="[^-]*Fuc[^-]*-">Fucose</option><option value="[^-]*NeuAc[^-]*-">NeuAc</option><option value="[^-]*NeuGc[^-]*-">NeuGc</option><option value="[^-]*-">Others</option><option value="">none</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)~(Sph))">Cer/Sph</option><option value=".+">(any)</option>}}</td>
+   <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)~(Sph))">Cer/Sph</option><option value=".+">any</option>}}</td>
    <td>&nbsp;</td>
    <td>{{#formtag:input|name="cals" type="button" value="SEARCH" id="mainchain"}}</td>

Category:LBS/Search: Difference between revisions

Revision as of 02:06, 5 December 2017

Search from Structure

All Polysaccharide Sequences

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