Template:JAS/MutationStat: Difference between revisions
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{{#lua: | {{#lua: | ||
local M=0 D=0 I=0 DI=0 O=0 | local M=0 D=0 I=0 DI=0 O=0 U=0 | ||
local total =0 | local total =0 | ||
for type in stdin:gmatch("&&{{{1}}}/(%w+)/") do | for type in stdin:gmatch("&&{{{1}}}/(%w+)/") do | ||
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elseif (string.match(type,"Ins")) then I = I+1 | elseif (string.match(type,"Ins")) then I = I+1 | ||
elseif (string.match(type,"Del")) then D = D+1 | elseif (string.match(type,"Del")) then D = D+1 | ||
elseif (string.match(type," | elseif (string.match(type,"DelIns")) then DI = DI+1 | ||
elseif (string.match(type,"Dup")) then U = U+1 | |||
else O = O+1 | else O = O+1 | ||
end | end | ||
end | end | ||
print("Single-nucleotide<br/>mutation<br/>" .. M .. "\n{{#bar:}}Deletion<br/>" .. D .. "\n{{#bar:}}Insertion<br/>" .. I .. "\n{{#bar:}}Del&Ins<br/>" .. DI .. "\n{{#bar:}}Others<br/>" .. O) | print("Single-nucleotide<br/>mutation<br/>" .. M .. "\n{{#bar:}}Deletion<br/>" .. D .. "\n{{#bar:}}Insertion<br/>" .. I .. "\n{{#bar:}}Del&Ins<br/>" .. DI .. "\n{{#bar:}}Dup<br/>" .. U .. "\n{{#bar:}}Others<br/>" .. O) | ||
print("\n{{#bar:}}Total<br/>" .. total) | print("\n{{#bar:}}Total<br/>" .. total) | ||
|{{#var:list}} }} | |{{#var:list}} }} | ||
|} | |} | ||
</center> | </center> | ||
Revision as of 18:48, 19 July 2012
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{{#lua: function SortAndPrint(prefix, T)
local idx = {}
for k,v in pairs(T) do
table.insert(idx, k)
end
table.sort(idx)
for i=1, #idx do
print(prefix .. idx[i] .. "
local exn = {}
local inn = {}
local etc = {}
local total =0
for gene in stdin:gmatch("&&([-%w]+)\n") do
total = total+1
local n = tonumber(string.match(gene,"(%d+)"))
if (string.match(gene,"exon")) then
if (exn[n] == nil) then exn[n] = 1 else exn[n] = exn[n]+1 end
elseif (string.match(gene,"intron")) then
if (inn[n] == nil) then inn[n] = 1 else inn[n] = inn[n]+1 end
else
if (etc[gene] == nil) then etc[gene] = 1 else etc[gene] = etc[gene]+1 end
end
end
SortAndPrint("E", exn)
SortAndPrint("I", inn)
SortAndPrint("", etc)
print("Total
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}} |
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{{#lua: local M=0 D=0 I=0 DI=0 O=0 U=0
local total =0
for type in stdin:gmatch("&&{{{1}}}/(%w+)/") do
total = total+1
if (string.match(type,"Mut")) then M = M+1
elseif (string.match(type,"Ins")) then I = I+1
elseif (string.match(type,"Del")) then D = D+1
elseif (string.match(type,"DelIns")) then DI = DI+1
elseif (string.match(type,"Dup")) then U = U+1
else O = O+1
end
end
print("Single-nucleotide
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}} |
