Template:LBS/FormatSugar: Difference between revisions
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local seq = stdin:match("[%S()%[%]]+"); | local seq = stdin:match("[%S()%[%]]+"); | ||
local ret = ""; | local ret = ""; | ||
for o,p,q,r,s,t in string.gmatch(seq, "([%[%(]?)(%a+)([?ab%-])([1-9]?)%-?([1-9])([%]%)]?)") do | for o,p,q,r,s,t in string.gmatch(seq, "([%[%(]?)(%a+)([?ab%-])([1-9]?)%-?([1-9]?/?[1-9]?)([%]%)]?)") do | ||
---Process ( --- | ---Process ( --- | ||
if (o) then ret = ret .. o end | if (o) then ret = ret .. o end | ||
Revision as of 16:56, 23 October 2011
{{#lua:
local seq = stdin:match("[%S()%[%]]+");
local ret = "";
for o,p,q,r,s,t in string.gmatch(seq, "([%[%(]?)(%a+)([?ab%-])([1-9]?)%-?([1-9]?/?[1-9]?)([%]%)]?)") do
---Process ( ---
if (o) then ret = ret .. o end
---Process sugar name---
if (string.match(p, "^Glc")) then
ret = ret .. '' .. p .. ""
elseif (string.match(p, "^Gal")) then
ret = ret .. '' .. p .. ""
elseif (string.match(p, "^Man")) then
ret = ret .. '' .. p .. ""
elseif (string.match(p, "^Fuc")) then
ret = ret .. '' .. p .. ""
elseif (string.match(p, "^Neu")) then
ret = ret .. '' .. p .. ""
else
ret = ret .. '' .. p .. ''
end
---Process alpha or beta---
if (q == "a") then ret = ret .. "α"
elseif (q == "b") then ret = ret .. "β"
elseif (q == "-") then ret = ret .. "*"
else ret = ret .. "" .. q end
---Process bond position---
ret = ret .. r .. "-" .. s .. ""
if (t) then ret = ret .. t end
end
if (string.match(seq,"Cer$")) then
ret = ret .. "Cer"
end
print(ret)
|GlcNAcb1-3Galb1-3GalNAca1-4GalNAcb1-4(EtnP-6)GlcNAcb1-3Manb1-4Glcb1-1Cer}}
