Lipoquality:Database: Difference between revisions
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<h1> | <h1>Lipidomics data resource</h1> | ||
Go to '''[[Lipoquality:Resource|LipoQuality resource page]]''' for browsing lipidomics data. | |||
</ | ; Homo sapiens : NIST plasma (SRM 1950) | ||
; <nowiki>Mus musculus (background: C57BL/6J; diet: CE2, chows of PUFA-dietary controled studies)</nowiki> : Adrenal gland, Atrium, Brain, Brown adipose tissue, Cerebellum, Cortex, Epididymis, Eye, Feces, Heart, Kidney, Large intestine, Liver, Lung, Macrophage, Medulla, Pancreas, Plasma, Seminal, Skeletal muscle, Skin, Small intestine, Spleen, Stomach, Testis, Thymus, Tongue, Ventricle, White adipose tissue | |||
; Human cultured cell : HEK293, HeLa, Jurkat, LNCaP, PC3, TPC-1 | |||
; Mouse cultured cell : 3T3-L1, C2C12 | |||
; Plant : <i>Arabidopsis thaliana, Oryza sativa, Solanum melongena</i> | |||
; Algae : <i>Auxenochlorella protothecoides, Chlamydomonas reinhardtii, Chlorella sorokiniana, Chlorella variabilis, Dunaliella salina, Euglena gracilis, Nannochloropsis oculata, Pavlova lutheri, Pleurochrysis carterae</i> | |||
; Measurement : See [http://metabolonote.kazusa.or.jp/Main_Page Metabolonote] (see [http://metabolonote.kazusa.or.jp/SE196:/ SE196], [http://metabolonote.kazusa.or.jp/SE197:/ SE197]) database. | |||
<h1>Data download</h1> | |||
[http://jcbl.jp//lipodata/download/AllData_20200206.zip AllData_20200206.zip] Feb 6, 2020 (22M) | |||
<h1>{{Bilingual|脂質記載法|Notation}}</h1> | |||
The style follows the proposal for lipidomics nomenclature | |||
(Liebisch G et al. J Lipid Res 2013. PMID 23549332). Please visit [http://prime.psc.riken.jp/Metabolomics_Software/MS-DIAL/index5.html the MS-DIAL page] for more details. | |||
{| | {| | ||
|valign="top"| | |valign="top"| | ||
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|- | |- | ||
| R2-lyso-PA | | R2-lyso-PA | ||
| | | LPA | ||
|- | |- | ||
| Phosphatidyl-choline | | Phosphatidyl-choline | ||
Line 41: | Line 38: | ||
|- | |- | ||
| R2-lyso-PC | | R2-lyso-PC | ||
| | | LPC | ||
|- | |- | ||
| R1-ether-PC | | R1-ether-PC | ||
Line 50: | Line 47: | ||
|- | |- | ||
| R2-lyso-PE | | R2-lyso-PE | ||
| | | LPE | ||
|- | |- | ||
| R1-ether-PE | | R1-ether-PE | ||
Line 59: | Line 56: | ||
|- | |- | ||
| R2-lyso-PI | | R2-lyso-PI | ||
| | | LPI | ||
|- | |- | ||
| Phosphatidyl-serine | | Phosphatidyl-serine | ||
Line 65: | Line 62: | ||
|- | |- | ||
| R2-lyso-PS | | R2-lyso-PS | ||
| | | LPS | ||
|- | |- | ||
| Phosphatidyl-glycerol | | Phosphatidyl-glycerol | ||
Line 71: | Line 68: | ||
|- | |- | ||
| R2-lyso-PG | | R2-lyso-PG | ||
| | | LPG | ||
|- | |- | ||
| Bis(monoacylglycero)phosphate | | Bis(monoacylglycero)phosphate | ||
Line 77: | Line 74: | ||
|- | |- | ||
| 1-Monoacylglycerol-phospho-2,3-diacylglycerol | | 1-Monoacylglycerol-phospho-2,3-diacylglycerol | ||
| | | HBMP | ||
|- | |- | ||
| Cardiolipin | | Cardiolipin | ||
Line 110: | Line 107: | ||
|- | |- | ||
| Glucuronosyl-diacylglycerol | | Glucuronosyl-diacylglycerol | ||
| | | DGGA | ||
|- | |- | ||
| Fatty acid | | Fatty acid | ||
Line 119: | Line 116: | ||
|- | |- | ||
| Acylcarnitine | | Acylcarnitine | ||
| | | CAR | ||
|- | |- | ||
| Sphingomyelin | | Sphingomyelin | ||
Line 128: | Line 125: | ||
; Ceramide symbols<ref>Masukawa Y et al. "Characterization of overall ceramide species in human stratum corneums" J Lipid Res 49:1466-1476, 2008</ref> | ; Ceramide symbols<ref>Masukawa Y et al. "Characterization of overall ceramide species in human stratum corneums" J Lipid Res 49:1466-1476, 2008</ref> | ||
{| class="wikitable" | {| class="wikitable" | ||
! | |||
! ''non-hydroxy FA''<br/>[N] | |||
! ''α-hydroxy FA''<br/>[A] | |||
! ''β-hydroxy FA'' <br/>[B] | |||
! ''esterified ω-hydroxy FA''<br/>[EO] | |||
|- | |- | ||
! ''dihydrosphingosine''<br/>[DS] | |||
| Cer | | Cer-NDS | ||
| Cer | | Cer-ADS | ||
| Cer | | Cer-BDS | ||
| Cer-EODS | |||
|- | |- | ||
! ''sphingosine''<br/>[S] | |||
| Cer | | Cer-NS | ||
| Cer | | Cer-AS | ||
| Cer | | Cer-BS | ||
| Cer-EOS | |||
|- | |- | ||
! ''phytosphingosine''<br/>[P] | |||
| Cer | | Cer-NP | ||
| Cer | | Cer-AP | ||
| Cer | | Cer-BP | ||
| Cer-EOP | |||
|- | |- | ||
! ''6-hydroxy sphingosine''<br/>[H] | |||
| Cer | | Cer-NH | ||
| Cer | | Cer-AH | ||
| Cer | | Cer-BH | ||
| Cer-EOH | |||
|} | |} | ||
</ | <references/> | ||
Revision as of 08:14, 30 March 2020
Lipidomics data resource
Go to LipoQuality resource page for browsing lipidomics data.
- Homo sapiens
- NIST plasma (SRM 1950)
- Mus musculus (background: C57BL/6J; diet: CE2, chows of PUFA-dietary controled studies)
- Adrenal gland, Atrium, Brain, Brown adipose tissue, Cerebellum, Cortex, Epididymis, Eye, Feces, Heart, Kidney, Large intestine, Liver, Lung, Macrophage, Medulla, Pancreas, Plasma, Seminal, Skeletal muscle, Skin, Small intestine, Spleen, Stomach, Testis, Thymus, Tongue, Ventricle, White adipose tissue
- Human cultured cell
- HEK293, HeLa, Jurkat, LNCaP, PC3, TPC-1
- Mouse cultured cell
- 3T3-L1, C2C12
- Plant
- Arabidopsis thaliana, Oryza sativa, Solanum melongena
- Algae
- Auxenochlorella protothecoides, Chlamydomonas reinhardtii, Chlorella sorokiniana, Chlorella variabilis, Dunaliella salina, Euglena gracilis, Nannochloropsis oculata, Pavlova lutheri, Pleurochrysis carterae
- Measurement
- See Metabolonote (see SE196, SE197) database.
Data download
AllData_20200206.zip Feb 6, 2020 (22M)
Notation
The style follows the proposal for lipidomics nomenclature (Liebisch G et al. J Lipid Res 2013. PMID 23549332). Please visit the MS-DIAL page for more details.
|
|
- Ceramide symbols[1]
non-hydroxy FA [N] |
α-hydroxy FA [A] |
β-hydroxy FA [B] |
esterified ω-hydroxy FA [EO] | |
---|---|---|---|---|
dihydrosphingosine [DS] |
Cer-NDS | Cer-ADS | Cer-BDS | Cer-EODS |
sphingosine [S] |
Cer-NS | Cer-AS | Cer-BS | Cer-EOS |
phytosphingosine [P] |
Cer-NP | Cer-AP | Cer-BP | Cer-EOP |
6-hydroxy sphingosine [H] |
Cer-NH | Cer-AH | Cer-BH | Cer-EOH |
- ↑ Masukawa Y et al. "Characterization of overall ceramide species in human stratum corneums" J Lipid Res 49:1466-1476, 2008