Lipoquality:Database: Difference between revisions

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<h1>Lipoquality</h1>
<h1>Lipidomics data resource</h1>
<p>
Go to '''[[Lipoquality:Resource|LipoQuality resource page]]''' for browsing lipidomics data.


</p>
; Homo sapiens : NIST plasma (SRM 1950)
; <nowiki>Mus musculus (background: C57BL/6J; diet: CE2, chows of PUFA-dietary controled studies)</nowiki> : Adrenal gland, Atrium, Brain, Brown adipose tissue, Cerebellum, Cortex, Epididymis, Eye, Feces, Heart, Kidney, Large intestine, Liver, Lung, Macrophage, Medulla, Pancreas, Plasma, Seminal, Skeletal muscle, Skin, Small intestine, Spleen, Stomach, Testis, Thymus, Tongue, Ventricle, White adipose tissue
; Human cultured cell : HEK293, HeLa, Jurkat, LNCaP, PC3, TPC-1
; Mouse cultured cell : 3T3-L1, C2C12
; Plant : <i>Arabidopsis thaliana, Oryza sativa, Solanum melongena</i>
; Algae : <i>Auxenochlorella protothecoides, Chlamydomonas reinhardtii, Chlorella sorokiniana, Chlorella variabilis, Dunaliella salina, Euglena gracilis, Nannochloropsis oculata, Pavlova lutheri, Pleurochrysis carterae</i>
; Measurement : See [http://metabolonote.kazusa.or.jp/Main_Page Metabolonote] (see [http://metabolonote.kazusa.or.jp/SE196:/ SE196], [http://metabolonote.kazusa.or.jp/SE197:/ SE197]) database.


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  <h2 style="font-size:100%;text-align:left;border-bottom:3px solid #630;margin:0.2em;padding:0.2em">[[Lipoquality:Resource|Resource]]</h2>
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<p>


Please click [[Lipoquality:Resource|here]] to access the lipoquality data.
<h1>Data download</h1>


<h2>Dataset</h2>
[http://jcbl.jp//lipodata/download/AllData_20200206.zip AllData_20200206.zip] Feb 6, 2020 (22M)
;Mouse : C75BL/6J mouse fed with 11F for 2 weeks
 
; Organs : Aorta (ApoE KO), Brain, Heart, Kidney, Liver, Lung, Macrophage, Muscle, Plasma, Plasma (ApoE KO), Small intestine, Spleen
 
; Measurement : See [http://metabolonote.kazusa.or.jp/SE110:/MS2 Metabolonote] database.
<h1>{{Bilingual|脂質記載法|Notation}}</h1>
 
The style follows the proposal for lipidomics nomenclature
(Liebisch G et al. J Lipid Res 2013. PMID 23549332). Please visit [http://prime.psc.riken.jp/Metabolomics_Software/MS-DIAL/index5.html the MS-DIAL page] for more details.


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<p>Following lipid categories are considered.
{|
{|
|valign="top"|
|valign="top"|
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|-
|-
| R2-lyso-PA
| R2-lyso-PA
| lysoPA
| LPA
|-
|-
| Phosphatidyl-choline
| Phosphatidyl-choline
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|-
|-
| R2-lyso-PC
| R2-lyso-PC
| lysoPC
| LPC
|-
|-
| R1-ether-PC
| R1-ether-PC
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|-
|-
| R2-lyso-PE
| R2-lyso-PE
| lysoPE
| LPE
|-
|-
| R1-ether-PE
| R1-ether-PE
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|-
|-
| R2-lyso-PI
| R2-lyso-PI
| lysoPI
| LPI
|-
|-
| Phosphatidyl-serine
| Phosphatidyl-serine
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|-
|-
| R2-lyso-PS
| R2-lyso-PS
| lysoPS
| LPS
|-
|-
| Phosphatidyl-glycerol
| Phosphatidyl-glycerol
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|-
|-
| R2-lyso-PG
| R2-lyso-PG
| lyzoPG
| LPG
|-
|-
| Bis(monoacylglycero)phosphate
| Bis(monoacylglycero)phosphate
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|-
|-
| 1-Monoacylglycerol-phospho-2,3-diacylglycerol
| 1-Monoacylglycerol-phospho-2,3-diacylglycerol
| hemiBMP
| HBMP
|-
|-
| Cardiolipin
| Cardiolipin
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|-
|-
| Glucuronosyl-diacylglycerol  
| Glucuronosyl-diacylglycerol  
| GlcADG
| DGGA
|-
|-
| Fatty acid
| Fatty acid
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|-
|-
| Acylcarnitine
| Acylcarnitine
| AC
| CAR
|-
|-
| Sphingomyelin
| Sphingomyelin
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; Ceramide symbols<ref>Masukawa Y et al. "Characterization of overall ceramide species in human stratum corneums" J Lipid Res 49:1466-1476, 2008</ref>  
; Ceramide symbols<ref>Masukawa Y et al. "Characterization of overall ceramide species in human stratum corneums" J Lipid Res 49:1466-1476, 2008</ref>  
{| class="wikitable"
{| class="wikitable"
| || non-hydroxy FA<br/>[N]
!
|| &alpha;-hydroxy FA<br/>[A]
! ''non-hydroxy FA''<br/>[N]
|| esterified &omega;-hydroxy FA<br/>[EO]
! ''&alpha;-hydroxy FA''<br/>[A]
! ''&beta;-hydroxy FA'' <br/>[B]
! ''esterified &omega;-hydroxy FA''<br/>[EO]
|-
|-
| dihydrosphingosine<br/>[DS]
! ''dihydrosphingosine''<br/>[DS]
| Cer[NDS]
| Cer-NDS
| Cer[ADS]
| Cer-ADS
| Cer[EODS]
| Cer-BDS
| Cer-EODS
|-
|-
| sphingosine<br/>[S]
! ''sphingosine''<br/>[S]
| Cer[NS]
| Cer-NS
| Cer[AS]
| Cer-AS
| Cer[EOS]
| Cer-BS
| Cer-EOS
|-
|-
| phytosphingosine<br/>[P]
! ''phytosphingosine''<br/>[P]
| Cer[AP]
| Cer-NP
| Cer[NP]
| Cer-AP
| Cer[EOP]
| Cer-BP
| Cer-EOP
|-
|-
| 6-hydroxy sphingosine<br/>[H]
! ''6-hydroxy sphingosine''<br/>[H]
| Cer[NH]
| Cer-NH
| Cer[AH]
| Cer-AH
| Cer[EOH]
| Cer-BH
| Cer-EOH
|}
|}


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<references/>
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Revision as of 08:14, 30 March 2020

Lipidomics data resource

Go to LipoQuality resource page for browsing lipidomics data.

Homo sapiens
NIST plasma (SRM 1950)
Mus musculus (background: C57BL/6J; diet: CE2, chows of PUFA-dietary controled studies)
Adrenal gland, Atrium, Brain, Brown adipose tissue, Cerebellum, Cortex, Epididymis, Eye, Feces, Heart, Kidney, Large intestine, Liver, Lung, Macrophage, Medulla, Pancreas, Plasma, Seminal, Skeletal muscle, Skin, Small intestine, Spleen, Stomach, Testis, Thymus, Tongue, Ventricle, White adipose tissue
Human cultured cell
HEK293, HeLa, Jurkat, LNCaP, PC3, TPC-1
Mouse cultured cell
3T3-L1, C2C12
Plant
Arabidopsis thaliana, Oryza sativa, Solanum melongena
Algae
Auxenochlorella protothecoides, Chlamydomonas reinhardtii, Chlorella sorokiniana, Chlorella variabilis, Dunaliella salina, Euglena gracilis, Nannochloropsis oculata, Pavlova lutheri, Pleurochrysis carterae
Measurement
See Metabolonote (see SE196, SE197) database.


Data download

AllData_20200206.zip Feb 6, 2020 (22M)


Notation

The style follows the proposal for lipidomics nomenclature (Liebisch G et al. J Lipid Res 2013. PMID 23549332). Please visit the MS-DIAL page for more details.

Phosphoglycerolipid symbols
Name Notation
Phosphatidic acid PA
R2-lyso-PA LPA
Phosphatidyl-choline PC
R2-lyso-PC LPC
R1-ether-PC EtherPC
Phosphatidyl-ethanolamine PE
R2-lyso-PE LPE
R1-ether-PE EtherPE
Phosphatidyl-inositol PI
R2-lyso-PI LPI
Phosphatidyl-serine PS
R2-lyso-PS LPS
Phosphatidyl-glycerol PG
R2-lyso-PG LPG
Bis(monoacylglycero)phosphate BMP
1-Monoacylglycerol-phospho-2,3-diacylglycerol HBMP
Cardiolipin CL
Glycerolipid, Plant lipid, and other symbols
Name Notation
Triacylglycerol TG
Diacylglycerol DG
Monoacylglycerol MG
Monogalactosyl-diacylglycerol MGDG
Digalactosyl-diacylglycerol DGDG
Sulfoquinovosyl-diacylglycerol SQDG
Diacylglyceryl-trimethylhomoserine DGTS
Glucuronosyl-diacylglycerol DGGA
Fatty acid FA
Fatty acid ester of hydroxyl fatty acid FAHFA
Acylcarnitine CAR
Sphingomyelin SM
Ceramide symbols[1]
non-hydroxy FA
[N] 		α-hydroxy FA
[A] 		β-hydroxy FA
[B] 		esterified ω-hydroxy FA
[EO]
dihydrosphingosine
[DS] 		Cer-NDS Cer-ADS Cer-BDS Cer-EODS
sphingosine
[S] 		Cer-NS Cer-AS Cer-BS Cer-EOS
phytosphingosine
[P] 		Cer-NP Cer-AP Cer-BP Cer-EOP
6-hydroxy sphingosine
[H] 		Cer-NH Cer-AH Cer-BH Cer-EOH
  1. ↑ Masukawa Y et al. "Characterization of overall ceramide species in human stratum corneums" J Lipid Res 49:1466-1476, 2008
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