Category:LBS/Search: Difference between revisions
mNo edit summary
 
(38 intermediate revisions by 4 users not shown)
Line 1: Line 1:
{{#includejs:LBSSearch.js}}
=={{Bilingual|構造から探す|Search from Structure}}==
{{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}}
<ul>
{{#includejs:GlycosphingolipidMassCalculator.js}}
<li> [[:Category:LBS#SphingolipidClass|Search from Sphingolipid Major Series]]
{{#includejs:AdvancedLBSSearch.js}}


<span style="color: red; font-size: x-large">under construction</span>
<li> [[:Category:LBS#SphingolipidSugar|Search from Specific Sugars]]


{| style="float:right"
<li> Search from the non-reducing end pattern (click "Show" to expand the table)
| __TOC__
 
|}
<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
<tr><th>Name</th><th width="300px">Structure</th></tr>
<tr><td>{{#volatile:ListMol/LBS|Blood group A|Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3}}</td><td>{{#invoke:LBS|FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
<tr><td>{{#volatile:ListMol/LBS|Blood group B|Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3}}</td>  <td>{{#invoke:LBS|FormatSugar|Gala1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
<tr><td>{{#volatile:ListMol/LBS|Blood group H|Structure=Fuca1-2Galb1-3GlcNAcb1-3}}</td>              <td>{{#invoke:LBS|FormatSugar|Fuca1-2Galb1-3GlcNAcb1-3-R}}</td></tr>
 
<tr><td>{{#volatile:ListMol/LBS|Lewis <sup>a</sup>|Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3}}</td>                <td>{{#invoke:LBS|FormatSugar|Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
<tr><td>{{#volatile:ListMol/LBS|Lewis <sup>b</sup>|Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3}}</td>        <td>{{#invoke:LBS|FormatSugar|Fuca1-2Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
<tr><td>{{#volatile:ListMol/LBS|sialyl-Lewis<sup>a</sup>|Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3}}</td> <td>{{#invoke:LBS|FormatSugar|NeuAca2-3Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
 
<tr><td>{{#volatile:ListMol/LBS|Lewis <sup>x</sup>, SSEA-1|Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3}}</td>        <td>{{#invoke:LBS|FormatSugar|Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
<tr><td>{{#volatile:ListMol/LBS|Lewis <sup>y</sup>|Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3}}</td>        <td>{{#invoke:LBS|FormatSugar|Fuca1-2Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
<tr><td>{{#volatile:ListMol/LBS|sialyl-Lewis <sup>x</sup>|Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3}}</td><td>{{#invoke:LBS|FormatSugar|NeuAca2-3Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
 
<tr><td>{{#volatile:ListMol/LBS|Forssman antigen|Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1}}</td>      <td>{{#invoke:LBS|FormatSugar|GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
 
<tr><td>{{#volatile:ListMol/LBS|P antigen|Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1}}</td>                        <td>{{#invoke:LBS|FormatSugar|GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
</table>
 
<li> Search from the sugar sequence [[Persist:ListAllChains|(List allchains)]] {{#formtag:fieldset||
<table>
<tr>
  <td>{{#formtag:select|name="nre" id="nre" |<option value="^">NR end</option><option value=".*" selected="yes">any</option>}}</td>
  <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">none</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="3th" id="3th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-." selected="yes">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">none</option>}}</td>
 
  <td>-</td>
  <td>{{#formtag:select|name="2nd" id="2nd"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-." selected="yes">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">none</option>}}</td>
<td>-</td>
  <td>{{#formtag:select|name="1st" id="1st"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-" selected="yes">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-">HexA</option><option value="[^-]*Fuc[^-]*-">Fucose</option><option value="[^-]*NeuAc[^-]*-">NeuAc</option><option value="[^-]*NeuGc[^-]*-">NeuGc</option><option value="[^-]*-">Others</option><option value="">none</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)|(Sph))">Cer/Sph</option><option value=".+">any</option>}}</td>
  <td>&nbsp;</td>
  <td>{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="true" id="sequence_search_button"}}</td>
</tr>
</table>
}}
 
<div id="PolySeqResult" style="height: 400px; overflow: scroll; resize: vertical; display: none"></div>
 
{{#formtag:fieldset||
{{#formtag:legend||Advanced search}}
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
{{#formtag:input|type="button" disabled="true" id="advanced_search_button" value="SEARCH"}}<br />
{{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}}
}}
 
<div id="loading">[[File:loading.gif]] loading...</div>
<div id="AdvResult" style="height: 400px; overflow: scroll; display: none"></div>
</ul>


==Search From Mass==
<!---
==All Polysaccharide Sequences==
{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}}
--->
 
=={{Bilingual|質量から探す|Search From Mass}}==
<!---
{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="yes" onclick="calculateF2M()"}}


{| class="wikitable" style="float:right;"
{| class="wikitable" style="float:right;"
Line 20: Line 76:
   <td style="border: none">Formula<br/>&nbsp;</td>
   <td style="border: none">Formula<br/>&nbsp;</td>
   <td style="border: none">{{#formtag:input|name="calc_formula" id="calc_formula" type="text" size="15" value="C6H12O6"}}{{#formtag:input|name="cals" type="button" value="calc" id="calculateF2M"}} <br/>&nbsp;&nbsp; &rarr;
   <td style="border: none">{{#formtag:input|name="calc_formula" id="calc_formula" type="text" size="15" value="C6H12O6"}}{{#formtag:input|name="cals" type="button" value="calc" id="calculateF2M"}} <br/>&nbsp;&nbsp; &rarr;
   {{#formtag:input|name="calc_mass" id="calc_mass" type="text" size="4" }}</td>
   {{#formtag:input|name="calc_mass" id="calc_mass" type="text" size="15" }}</td>
   </tr>
   </tr>
  </table>
  </table>
}}
}}
|}
|}


{{#formtag:fieldset||
{{#formtag:fieldset||
Line 33: Line 90:


}}
}}
<!---
 
<table>
<table>
  <tr>
  <tr>
Line 43: Line 100:
<td>{{#formtag:input|type="checkbox" name="none" value="none" id="none"}}<label for="none">1200-1400</label></td>
<td>{{#formtag:input|type="checkbox" name="none" value="none" id="none"}}<label for="none">1200-1400</label></td>
</table>
</table>
GM1, 中性、硫酸基のGalCerなど例をいれておく
--->
--->


{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="yes" onclick="calculateF2M()"}}
{|
 
|
<!-- Glycosphingolipid Mass Calculator -->
<!-- Glycosphingolipid Mass Calculator -->
<table class="wikitable collapsible collapsed" border=1 cellspacing=0 cellpadding=5 style="font-size: small; ackground-color: white; border-collapse: collapse">
<table class="wikitable" border=1 cellspacing=0 cellpadding=5 style="font-size: small; background-color: white; border-collapse: collapse">
  <tr><th colspan="6" style="text-align: center; font-weight: 600">Glycosphingolipid Mass Calculator</th></tr>
  <tr><th colspan="6" style="text-align: center; font-weight: 600">Glycosphingolipid Mass Calculator for MS Analysis</th></tr>
  <tr>
  <tr>
   <td colspan="5">
   <td colspan="5">
   <table style="text-align: center">
   <table style="text-align: center">
     <tr><td style="border: none">{{#formtag:select|name="cs_average" id="cs_average"|{{#formtag:option|value="false"|Exact}}{{#formtag:option|value="true"|Average}} }} Mass</td><td style="border: none">Nominal Mass</td><td style="border: none">Formula</td></tr>
     <tr><td style="border: none"><span style="display: none">{{#formtag:select|name="cs_average" id="cs_average"|{{#formtag:option|value="false"|Exact}}{{#formtag:option|value="true"|Average}} }}</span> Exact Mass</td><td style="border: none">Nominal Mass</td><td style="border: none">Formula</td></tr>
     <tr><td style="border: none">{{#formtag:input|type="text" id="cs_mass" style="width: 12em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_nominalmass" style="width: 8em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_formula" style="width: 12em"}}</td></tr>
     <tr><td style="border: none">{{#formtag:input|type="text" id="cs_mass" style="width: 12em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_nominalmass" style="width: 8em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_formula" style="width: 12em"}}</td></tr>
   </table>
   </table>
Line 85: Line 144:
   <td>Carbon No.<br />{{#formtag:input|type="number" min="5" value="5" id="cs_lcb_carbonno" style="width: 3em"}}</td>
   <td>Carbon No.<br />{{#formtag:input|type="number" min="5" value="5" id="cs_lcb_carbonno" style="width: 3em"}}</td>
   <td>Unsaturation<br />{{#formtag:input|type="number" min="0" value="0" id="cs_lcb_unsaturation" style="width: 3em"}}</td>
   <td>Unsaturation<br />{{#formtag:input|type="number" min="0" value="0" id="cs_lcb_unsaturation" style="width: 3em"}}</td>
   <td>Hydroxy group<br />{{#formtag:input|type="number" min="0" value="0" id="cs_lcb_hydroxygroup" style="width: 3em"}}</td>
   <td>Hydroxy group<br />{{#formtag:input|type="number" min="2" value="2" id="cs_lcb_hydroxygroup" style="width: 3em"}}</td>
  </tr>
  </tr>
  <tr style="background-color: #ccccaa">
  <tr style="background-color: #ccccaa">
Line 91: Line 150:
   <td>Na<br />{{#formtag:input|type="number" min="0" value="0" id="cs_na" style="width: 3em"}}</td>
   <td>Na<br />{{#formtag:input|type="number" min="0" value="0" id="cs_na" style="width: 3em"}}</td>
   <td>K<br />{{#formtag:input|type="number" min="0" value="0" id="cs_k" style="width: 3em"}}</td>
   <td>K<br />{{#formtag:input|type="number" min="0" value="0" id="cs_k" style="width: 3em"}}</td>
   <td>Ca<br />{{#formtag:input|type="number" min="0" value="0" id="cs_ca" style="width: 3em"}}</td>
   <td>Ammonium<br />{{#formtag:input|type="number" min="0" value="0" id="cs_nh4" style="width: 3em"}}</td>
  </tr>
  </tr>
  <tr style="background-color: #cccccc">
  <tr style="background-color: #cccccc">
Line 108: Line 167:
</table>
</table>


==Search from Structure==
|valign=top|
 
<big>Examples</big>
<!--
{{#formtag:fieldset||
{{#formtag:legend||Sphingolipid Major Series}}
<table>
<table>
<tr>
<tr><td>'''Ganglioside GM1 of FA 18:0, LCB d20:1''' ([[LBSG2005105]]) {{#formtag:input|type="button" value="Display" id="ex_ganglioside"}}
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Gala</label></td>
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Spirometo</label></td>
<li>Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Ganglio</label></td>
<li>Long chain base [20 carbons, 1 unsaturation, 2 hydroxy groups]
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Isoganglio</label></td>
</ul>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Lactoganglio</label></td>
</td></tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Ganglio a-series</label></td>
</tr>
<tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">SM/CPE/CAEP</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Spirometo</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC GlcN</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC GlcA</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC Man</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Others</label></td>
</tr>
</table>
}}
-->


<div style="margin-left: 1.5em">
<tr><td>'''Sulfatide of FA 24:1, LCB d18:1''' ([[LBSG1001005]]) {{#formtag:input|type="button" value="Display" id="ex_sulfatide"}}
[[:Category:LBS#Sphingolipid_.E3.82.B9.E3.83.95.E3.82.A3.E3.83.B3.E3.82.B4.E8.84.82.E8.B3.AA|Search by Sphingolipid Major Series]]<br />
<ul><li>Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
[[:Category:LBS#Second_.28s2.29_Code_for_subsequent_sugars|Search by Specific Sugars]]<br />
<li>Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
</div>
<li>Long chain base [18 carbons, 1 unsaturation, 2 hydroxy groups]
<li>Modification [Sulfate: 1]
</ul>
</td></tr>


{{#formtag:fieldset||
<tr><td>'''Lactotetraosylceramide of FA 16:0, LCB t18:0''' ([[LBSG3B04001]]) {{#formtag:input|type="button" value="Display" id="ex_lactotetraosylceramide"}}
{{#formtag:legend||Search from the non-reducing end pattern (click "Show" to expand the table)}}
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
}}
<li>Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
<li>Long chain base [18 carbons, 0 unsaturation, 3 hydroxy groups]
<tr><th>Name</th><th>Structure</th></tr>
</ul>
 
</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group A]]</td><td>{{LBS/FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group B]]</td>  <td>{{LBS/FormatSugar|Gala1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-3GlcNAcb1-3|Blood group H]]</td>              <td>{{LBS/FormatSugar|Fuca1-2Galb1-3GlcNAcb1-3-R}}</td></tr>
 
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3|Lewis <sup>a</sup>]]</td>                <td>{{LBS/FormatSugar|Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3|Lewis <sup>b</sup>]]</td>        <td>{{LBS/FormatSugar|Fuca1-2Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3|sialyl-Lewis<sup>a</sup>]]</td> <td>{{LBS/FormatSugar|NeuAca2-3Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
 
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3|Lewis <sup>x</sup>, SSEA-1]]</td>        <td>{{LBS/FormatSugar|Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3|Lewis <sup>y</sup>]]</td>        <td>{{LBS/FormatSugar|Fuca1-2Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
<tr><td>[[Volatile:ListMol/LBS|1=Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3|sialyl-Lewis <sup>x</sup>]]</td><td>{{LBS/FormatSugar|NeuAca2-3Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
 
<tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1|Forssman antigen]]</td>      <td>{{LBS/FormatSugar|GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>


<tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1|P antigen]]</td>                        <td>{{LBS/FormatSugar|GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
</table>
</table>
|}


{{#formtag:fieldset||
<!---
{{#formtag:legend||Search from the polysaccharide sequence}}
<table>
<tr>
  <td>{{#formtag:select|name="nre" id="nre"|<option value="">(Non-reducing end)</option><option value=".*" selected="yes">(any)</option>}}</td>
  <td>{{#formtag:select|name="4th" id="4th"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-.">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-.">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="Neu[AG]c[1-9]?α2-.">NeuAc/NeuGc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="3rd" id="3th"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-.">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-." selected="yes">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="Neu[AG]c[1-9]?α2-.">NeuAc/NeuGc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="2nd" id="2nd"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-." selected="yes">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-.">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="NeuAc[1-9]?α2-.">NeuAc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="1st" id="1st"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-.">Galβ-</option><option value="Glcb.-." selected="yes">Glcβ-</option><option value="NeuAc..-.">NeuAc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
  <td>-</td>
  <td>{{#formtag:select|name="re"  id="re" |<option value="(Cer~Sph)">Cer/Sph</option><option value=".+">(any)</option>}}</td>
</tr>
</table>
{{#formtag:input|name="cals" type="button" value="SEARCH" id="mainchain"}}
}}
 
{{#formtag:fieldset||
{{#formtag:legend||Polysaccharide sequence (Advanced)}}
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
{{#formtag:input|type="button" id="advanced_search_button" value="SEARCH"}}
}}
{{#persist:ListMainchain|List mainchain|ListMainchain|0|dummy|;}}
 
{{#formtag:fieldset||
{{#formtag:fieldset||
{{#formtag:legend||Display setting}}
{{#formtag:legend||Display setting}}
Line 199: Line 207:
</table>
</table>
}}
}}
--->

Latest revision as of 04:25, 25 January 2023

Search from Structure

  • Search from Sphingolipid Major Series
  • Search from Specific Sugars
  • Search from the non-reducing end pattern (click "Show" to expand the table)
  • Search from the sugar sequence (List allchains)
    - - - -  

    Advanced search

    Loading.gif loading...


Search From Mass

Glycosphingolipid Mass Calculator for MS Analysis
Exact MassNominal MassFormula
Carbohydrates Hexose
 HexNAc
 NeuAc
 NeuGc
Fucose
 HexA
Fatty Acids Carbon No.
 Unsaturation
 Hydroxy group
 Polarity
Long Chain Bases Carbon No.
 Unsaturation
 Hydroxy group
Adduct Ions Na
 K
 Ammonium
Modification Sulfate
 Phosphate
 Methyl
 Acetyl
Lactone

Examples

Ganglioside GM1 of FA 18:0, LCB d20:1 (LBSG2005105)
  • Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
  • Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
  • Long chain base [20 carbons, 1 unsaturation, 2 hydroxy groups]
Sulfatide of FA 24:1, LCB d18:1 (LBSG1001005)
  • Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
  • Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
  • Long chain base [18 carbons, 1 unsaturation, 2 hydroxy groups]
  • Modification [Sulfate: 1]
Lactotetraosylceramide of FA 16:0, LCB t18:0 (LBSG3B04001)
  • Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
  • Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
  • Long chain base [18 carbons, 0 unsaturation, 3 hydroxy groups]


This category currently contains no pages or media.

Retrieved from "http://lipidbank.jp/mediawiki/index.php?title=Category:LBS/Search&oldid=116988"