Category:LBS/Search: Difference between revisions

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{{#includejs:LBSSearch.js}}
=={{Bilingual|構造から探す|Search from Structure}}==
{{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}}
<ul>
{{#includejs:GlycosphingolipidMassCalculator.js}}
<li> [[:Category:LBS#SphingolipidClass|Search from Sphingolipid Major Series]]
{{#includejs:AdvancedLBSSearch.js}}


<span style="color: red; font-size: x-large">under construction</span>
<li> [[:Category:LBS#SphingolipidSugar|Search from Specific Sugars]]


<!--DEFINITIONS-->
<li> Search from the non-reducing end pattern (click "Show" to expand the table)
{{#def:Hexose|Glc..-.~Galf?..-[1-9/]+~Man..-.}}
{{#def:HexNAc|GlcNAc([1-6]Me)?..-.~GalNAc([1-6]Me)?..-.}}
{{#def:HexA|GlcA([1-6]Me)?..-.|GalA([1-6]Me)?..-.}}
{{#def:Fucose|([1-6]-Deoxy-)?Fuc([1-6]Me)?
{{def:NeuAc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuAc([1-9]Me|[1-9]Methoxy)?}}
{{def:NeuGc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuGc([1-9]Me|[1-9]Methoxy)?}}


==Search from Structure==
<!--
{{#formtag:fieldset||
{{#formtag:legend||Sphingolipid Major Series}}
<table>
<tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Gala</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Spirometo</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Ganglio</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Isoganglio</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Lactoganglio</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Ganglio a-series</label></td>
</tr>
<tr>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">SM/CPE/CAEP</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Spirometo</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC GlcN</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC GlcA</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">GIPC Man</label></td>
  <td>{{#formtag:input|type="radio" name="none" value="none" id="none"}}<label for="none">Others</label></td>
</tr>
</table>
}}
-->
<div style="margin-left: 1.5em">
[[:Category:LBS#Sphingolipid_.E3.82.B9.E3.83.95.E3.82.A3.E3.83.B3.E3.82.B4.E8.84.82.E8.B3.AA|Search by Sphingolipid Major Series]]<br />
[[:Category:LBS#Second_.28s2.29_Code_for_subsequent_sugars|Search by Specific Sugars]]<br />
</div>
{{#formtag:fieldset||
{{#formtag:legend||Search from the non-reducing end pattern (click "Show" to expand the table)}}
}}
<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
  <tr><th>Name</th><th>Structure</th></tr>
  <tr><th>Name</th><th width="300px">Structure</th></tr>
 
  <tr><td>{{#volatile:ListMol/LBS|Blood group A|Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3}}</td><td>{{#invoke:LBS|FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group A]]</td><td>{{LBS/FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|Blood group B|Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3}}</td>  <td>{{#invoke:LBS|FormatSugar|Gala1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group B]]</td>  <td>{{LBS/FormatSugar|Gala1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|Blood group H|Structure=Fuca1-2Galb1-3GlcNAcb1-3}}</td>              <td>{{#invoke:LBS|FormatSugar|Fuca1-2Galb1-3GlcNAcb1-3-R}}</td></tr>
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-3GlcNAcb1-3|Blood group H]]</td>              <td>{{LBS/FormatSugar|Fuca1-2Galb1-3GlcNAcb1-3-R}}</td></tr>


  <tr><td>[[Volatile:ListMol/LBS|1=Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3|Lewis <sup>a</sup>]]</td>                <td>{{LBS/FormatSugar|Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|Lewis <sup>a</sup>|Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3}}</td>                <td>{{#invoke:LBS|FormatSugar|Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3|Lewis <sup>b</sup>]]</td>        <td>{{LBS/FormatSugar|Fuca1-2Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|Lewis <sup>b</sup>|Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3}}</td>        <td>{{#invoke:LBS|FormatSugar|Fuca1-2Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3|sialyl-Lewis<sup>a</sup>]]</td> <td>{{LBS/FormatSugar|NeuAca2-3Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|sialyl-Lewis<sup>a</sup>|Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3}}</td> <td>{{#invoke:LBS|FormatSugar|NeuAca2-3Galb1-3(Fuca1-4)GlcNAcb1-3-R}}</td></tr>


  <tr><td>[[Volatile:ListMol/LBS|1=Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3|Lewis <sup>x</sup>, SSEA-1]]</td>        <td>{{LBS/FormatSugar|Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|Lewis <sup>x</sup>, SSEA-1|Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3}}</td>        <td>{{#invoke:LBS|FormatSugar|Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3|Lewis <sup>y</sup>]]</td>        <td>{{LBS/FormatSugar|Fuca1-2Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|Lewis <sup>y</sup>|Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3}}</td>        <td>{{#invoke:LBS|FormatSugar|Fuca1-2Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
  <tr><td>[[Volatile:ListMol/LBS|1=Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3|sialyl-Lewis <sup>x</sup>]]</td><td>{{LBS/FormatSugar|NeuAca2-3Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|sialyl-Lewis <sup>x</sup>|Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3}}</td><td>{{#invoke:LBS|FormatSugar|NeuAca2-3Galb1-4(Fuca1-3)GlcNAcb1-3-R}}</td></tr>


  <tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1|Forssman antigen]]</td>      <td>{{LBS/FormatSugar|GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|Forssman antigen|Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1}}</td>      <td>{{#invoke:LBS|FormatSugar|GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>


  <tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1|P antigen]]</td>                        <td>{{LBS/FormatSugar|GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
  <tr><td>{{#volatile:ListMol/LBS|P antigen|Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1}}</td>                        <td>{{#invoke:LBS|FormatSugar|GalNAcb1-3Gala1-4Galb1-4Glcb1-R}}</td></tr>
</table>
</table>


{{#formtag:fieldset||
<li> Search from the sugar sequence [[Persist:ListAllChains|(List allchains)]] {{#formtag:fieldset||
{{#formtag:legend||Search from the polysaccharide sequence}}
<table>
<table>
  <tr>
  <tr>
   <td>{{#formtag:select|name="nre" id="nre"|<option value="">(Non-reducing end)</option><option value=".*" selected="yes">(any)</option>}}</td>
   <td>{{#formtag:select|name="nre" id="nre" |<option value="^">NR end</option><option value=".*" selected="yes">any</option>}}</td>
   <td>{{#formtag:select|name="4th" id="4th"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-.">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-.">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="Neu[AG]c[1-9]?α2-.">NeuAc/NeuGc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
   <td>{{#formtag:select|name="4th" id="4th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="" selected="yes">none</option>}}</td>
   <td>-</td>
   <td>-</td>
   <td>{{#formtag:select|name="3rd" id="3th"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-.">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-." selected="yes">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="Neu[AG]c[1-9]?α2-.">NeuAc/NeuGc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
   <td>{{#formtag:select|name="3th" id="3th"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-.">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-." selected="yes">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">none</option>}}</td>
 
   <td>-</td>
   <td>-</td>
   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-." selected="yes">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-.">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="NeuAc[1-9]?α2-.">NeuAc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-." selected="yes">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-.">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-.">HexA</option><option value="[^-]*Fuc[^-]*-.">Fucose</option><option value="[^-]*NeuAc[^-]*-.">NeuAc</option><option value="[^-]*NeuGc[^-]*-.">NeuGc</option><option value="[^-]*-.">Others</option><option value="">none</option>}}</td>
<td>-</td>
  <td>{{#formtag:select|name="1st" id="1st"|<option value="((Glc)|(Gal)|(Man)|(Ino))[abfp0-9]*-" selected="yes">Hexose</option><option value="((GlcNAc)|(GalNAc))[abfp0-9]*-">HexNAc</option><option value="((GlcA)|(GalA))[abfp0-9]*-">HexA</option><option value="[^-]*Fuc[^-]*-">Fucose</option><option value="[^-]*NeuAc[^-]*-">NeuAc</option><option value="[^-]*NeuGc[^-]*-">NeuGc</option><option value="[^-]*-">Others</option><option value="">none</option>}}</td>
   <td>-</td>
   <td>-</td>
   <td>{{#formtag:select|name="1st" id="1st"|<option value="Gala[1-9]?-">Galα-</option><option value="Galb[1-9]?-">Galβ-</option><option value="Glcb.-" selected="yes">Glcβ-</option><option value="NeuAc..-">NeuAc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
   <td>{{#formtag:select|name="re" id="re" |<option value="((Cer)|(Sph))">Cer/Sph</option><option value=".+">any</option>}}</td>
   <td>-</td>
   <td>&nbsp;</td>
   <td>{{#formtag:select|name="re" id="re" |<option value="(Cer~Sph)">Cer/Sph</option><option value=".+">(any)</option>}}</td>
   <td>{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="true" id="sequence_search_button"}}</td>
  </tr>
  </tr>
</table>
</table>
{{#formtag:input|name="cals" type="button" value="SEARCH" id="mainchain"}}
}}
}}
<div id="PolySeqResult" style="height: 400px; overflow: scroll; resize: vertical; display: none"></div>


{{#formtag:fieldset||
{{#formtag:fieldset||
{{#formtag:legend||Polysaccharide sequence (Advanced)}}
{{#formtag:legend||Advanced search}}
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
{{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
{{#formtag:input|type="button" id="advanced_search_button" value="SEARCH"}}<br />
{{#formtag:input|type="button" disabled="true" id="advanced_search_button" value="SEARCH"}}<br />
{{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}}
{{#formtag:input|type="checkbox" id="advanced_search_nre"}}{{#formtag:label|for="advanced_search_nre"|Non-reducing end}}
}}
}}
{{#persist:ListMainchain|List mainchain|ListMainchain|0|dummy|;}}


{{#formtag:fieldset||
<div id="loading">[[File:loading.gif]] loading...</div>
{{#formtag:legend||Display setting}}
<div id="AdvResult" style="height: 400px; overflow: scroll; display: none"></div>
<table>
</ul>
<tr>
 
  <td>limit/page</td>
<!---
  <td>{{#formtag:select|name="limit_page"|<option>10</option><option>50</option><option>100</option>}}</td>
==All Polysaccharide Sequences==
  <td>order</td>
{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}}
  <td>{{#formtag:select|name="table_id"|<option>lipidbank id</option><option>compound name</option>}} {{#formtag:select|name="sort"|<option>ascending</option><option>descending</option>}}</td>
--->
</tr>
</table>
}}


==Search From Mass==
=={{Bilingual|質量から探す|Search From Mass}}==
<!---
{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="yes" onclick="calculateF2M()"}}


{| class="wikitable" style="float:right;"
{| class="wikitable" style="float:right;"
Line 117: Line 76:
   <td style="border: none">Formula<br/>&nbsp;</td>
   <td style="border: none">Formula<br/>&nbsp;</td>
   <td style="border: none">{{#formtag:input|name="calc_formula" id="calc_formula" type="text" size="15" value="C6H12O6"}}{{#formtag:input|name="cals" type="button" value="calc" id="calculateF2M"}} <br/>&nbsp;&nbsp; &rarr;
   <td style="border: none">{{#formtag:input|name="calc_formula" id="calc_formula" type="text" size="15" value="C6H12O6"}}{{#formtag:input|name="cals" type="button" value="calc" id="calculateF2M"}} <br/>&nbsp;&nbsp; &rarr;
   {{#formtag:input|name="calc_mass" id="calc_mass" type="text" size="4" }}</td>
   {{#formtag:input|name="calc_mass" id="calc_mass" type="text" size="15" }}</td>
   </tr>
   </tr>
  </table>
  </table>
}}
}}
|}
|}


{{#formtag:fieldset||
{{#formtag:fieldset||
Line 130: Line 90:


}}
}}
<!---
 
<table>
<table>
  <tr>
  <tr>
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<td>{{#formtag:input|type="checkbox" name="none" value="none" id="none"}}<label for="none">1200-1400</label></td>
<td>{{#formtag:input|type="checkbox" name="none" value="none" id="none"}}<label for="none">1200-1400</label></td>
</table>
</table>
GM1, 中性、硫酸基のGalCerなど例をいれておく
--->
--->


{{#formtag:input|name="cals" type="button" value="SEARCH" disabled="yes" onclick="calculateF2M()"}}
{|
 
|
<!-- Glycosphingolipid Mass Calculator -->
<!-- Glycosphingolipid Mass Calculator -->
<table class="wikitable collapsible collapsed" border=1 cellspacing=0 cellpadding=5 style="font-size: small; ackground-color: white; border-collapse: collapse">
<table class="wikitable" border=1 cellspacing=0 cellpadding=5 style="font-size: small; background-color: white; border-collapse: collapse">
  <tr><th colspan="6" style="text-align: center; font-weight: 600">Glycosphingolipid Mass Calculator</th></tr>
  <tr><th colspan="6" style="text-align: center; font-weight: 600">Glycosphingolipid Mass Calculator for MS Analysis</th></tr>
  <tr>
  <tr>
   <td colspan="5">
   <td colspan="5">
   <table style="text-align: center">
   <table style="text-align: center">
     <tr><td style="border: none">{{#formtag:select|name="cs_average" id="cs_average"|{{#formtag:option|value="false"|Exact}}{{#formtag:option|value="true"|Average}} }} Mass</td><td style="border: none">Nominal Mass</td><td style="border: none">Formula</td></tr>
     <tr><td style="border: none"><span style="display: none">{{#formtag:select|name="cs_average" id="cs_average"|{{#formtag:option|value="false"|Exact}}{{#formtag:option|value="true"|Average}} }}</span> Exact Mass</td><td style="border: none">Nominal Mass</td><td style="border: none">Formula</td></tr>
     <tr><td style="border: none">{{#formtag:input|type="text" id="cs_mass" style="width: 12em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_nominalmass" style="width: 8em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_formula" style="width: 12em"}}</td></tr>
     <tr><td style="border: none">{{#formtag:input|type="text" id="cs_mass" style="width: 12em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_nominalmass" style="width: 8em"}}</td><td style="border: none">{{#formtag:input|type="text" id="cs_formula" style="width: 12em"}}</td></tr>
   </table>
   </table>
Line 182: Line 144:
   <td>Carbon No.<br />{{#formtag:input|type="number" min="5" value="5" id="cs_lcb_carbonno" style="width: 3em"}}</td>
   <td>Carbon No.<br />{{#formtag:input|type="number" min="5" value="5" id="cs_lcb_carbonno" style="width: 3em"}}</td>
   <td>Unsaturation<br />{{#formtag:input|type="number" min="0" value="0" id="cs_lcb_unsaturation" style="width: 3em"}}</td>
   <td>Unsaturation<br />{{#formtag:input|type="number" min="0" value="0" id="cs_lcb_unsaturation" style="width: 3em"}}</td>
   <td>Hydroxy group<br />{{#formtag:input|type="number" min="0" value="0" id="cs_lcb_hydroxygroup" style="width: 3em"}}</td>
   <td>Hydroxy group<br />{{#formtag:input|type="number" min="2" value="2" id="cs_lcb_hydroxygroup" style="width: 3em"}}</td>
  </tr>
  </tr>
  <tr style="background-color: #ccccaa">
  <tr style="background-color: #ccccaa">
Line 188: Line 150:
   <td>Na<br />{{#formtag:input|type="number" min="0" value="0" id="cs_na" style="width: 3em"}}</td>
   <td>Na<br />{{#formtag:input|type="number" min="0" value="0" id="cs_na" style="width: 3em"}}</td>
   <td>K<br />{{#formtag:input|type="number" min="0" value="0" id="cs_k" style="width: 3em"}}</td>
   <td>K<br />{{#formtag:input|type="number" min="0" value="0" id="cs_k" style="width: 3em"}}</td>
   <td>Ca<br />{{#formtag:input|type="number" min="0" value="0" id="cs_ca" style="width: 3em"}}</td>
   <td>Ammonium<br />{{#formtag:input|type="number" min="0" value="0" id="cs_nh4" style="width: 3em"}}</td>
  </tr>
  </tr>
  <tr style="background-color: #cccccc">
  <tr style="background-color: #cccccc">
Line 204: Line 166:
  </tr>
  </tr>
</table>
</table>
|valign=top|
<big>Examples</big>
<table>
<tr><td>'''Ganglioside GM1 of FA 18:0, LCB d20:1''' ([[LBSG2005105]]) {{#formtag:input|type="button" value="Display" id="ex_ganglioside"}}
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
<li>Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
<li>Long chain base [20 carbons, 1 unsaturation, 2 hydroxy groups]
</ul>
</td></tr>
<tr><td>'''Sulfatide of FA 24:1, LCB d18:1''' ([[LBSG1001005]]) {{#formtag:input|type="button" value="Display" id="ex_sulfatide"}}
<ul><li>Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
<li>Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
<li>Long chain base [18 carbons, 1 unsaturation, 2 hydroxy groups]
<li>Modification [Sulfate: 1]
</ul>
</td></tr>
<tr><td>'''Lactotetraosylceramide of FA 16:0, LCB t18:0''' ([[LBSG3B04001]]) {{#formtag:input|type="button" value="Display" id="ex_lactotetraosylceramide"}}
<ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
<li>Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
<li>Long chain base [18 carbons, 0 unsaturation, 3 hydroxy groups]
</ul>
</td></tr>
</table>
|}
<!---
{{#formtag:fieldset||
{{#formtag:legend||Display setting}}
<table>
<tr>
  <td>limit/page</td>
  <td>{{#formtag:select|name="limit_page"|<option>10</option><option>50</option><option>100</option>}}</td>
  <td>order</td>
  <td>{{#formtag:select|name="table_id"|<option>lipidbank id</option><option>compound name</option>}} {{#formtag:select|name="sort"|<option>ascending</option><option>descending</option>}}</td>
</tr>
</table>
}}
--->

Latest revision as of 04:25, 25 January 2023

Search from Structure

  • Search from Sphingolipid Major Series
  • Search from Specific Sugars
  • Search from the non-reducing end pattern (click "Show" to expand the table)
  • Search from the sugar sequence (List allchains)
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Search From Mass

Glycosphingolipid Mass Calculator for MS Analysis
Exact MassNominal MassFormula
Carbohydrates Hexose
 HexNAc
 NeuAc
 NeuGc
Fucose
 HexA
Fatty Acids Carbon No.
 Unsaturation
 Hydroxy group
 Polarity
Long Chain Bases Carbon No.
 Unsaturation
 Hydroxy group
Adduct Ions Na
 K
 Ammonium
Modification Sulfate
 Phosphate
 Methyl
 Acetyl
Lactone

Examples

Ganglioside GM1 of FA 18:0, LCB d20:1 (LBSG2005105)
  • Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
  • Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
  • Long chain base [20 carbons, 1 unsaturation, 2 hydroxy groups]
Sulfatide of FA 24:1, LCB d18:1 (LBSG1001005)
  • Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
  • Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
  • Long chain base [18 carbons, 1 unsaturation, 2 hydroxy groups]
  • Modification [Sulfate: 1]
Lactotetraosylceramide of FA 16:0, LCB t18:0 (LBSG3B04001)
  • Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
  • Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
  • Long chain base [18 carbons, 0 unsaturation, 3 hydroxy groups]


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