Template:JAS/MutationStat: Difference between revisions

Latest revision as of 02:34, 31 January 2023

The number of mutations (E = exon; I = intron)
E1 5	E2 10	E3 8	E4 22	E5 3	E6 3	E7 7	E8 9	E9 10	E10 3	E11 8	E12 4	E13 4	E14 8	E15 4	E16 4	E17 1	I10 1	I12 1	I15 1	Exon15 1	promoter 2	Total 119

The type of mutations
Single-nucleotide mutation 75	Deletion 30	Insertion 10	Del&Ins 1	Duplication 5	Others 0	Total 121

@@ Line 1: / Line 1: @@
-{| class="wikitable" style="text-align:center"
+{{#def:list|{{#SearchLine:&&{{{1|LDLR}}}/|JASReference}}}}
+<center>
+{| class="wikitable" style="text-align:center;width:100%"
 |+ The number of mutations <small>(E = exon; I = intron)</small>
 |
-{{#lua:
+{{#invoke:JAS|NumberOfMutations|{{#var:list}} }}
-  function SortAndPrint(prefix, T)
+|}
-    local idx = {}
-    for k,v in pairs(T) do
-      table.insert(idx, k)
-    end
-    table.sort(idx)
-    for i=1, #idx do
-      print(prefix .. idx[i] .. "<br/>" .. T[idx[i]] .."\n{{#bar:}}")
-    end
-  end
-  local exn = {}
+{| class="wikitable" style="text-align:center;width:100%"
-  local inn = {}
+|+ The type of mutations
-  local etc = {}
-  local total =0
-  for gene in stdin:gmatch("&&(%w+)\n") do
-    total = total+1
-    local n = tonumber(string.match(gene,"(%d+)"))
-    if (string.match(gene,"exon")) then
-      if (exn[n] == nil) then exn[n] = 1 else exn[n] = exn[n]+1 end
-    elseif (string.match(gene,"intron")) then
-      if (inn[n] == nil) then inn[n] = 1 else inn[n] = inn[n]+1 end
-    else
-      if (etc[gene] == nil) then etc[gene] = 1 else etc[gene] = etc[gene]+1 end
-    end
-  end
-  SortAndPrint("E", exn)
-  SortAndPrint("I", inn)
-  SortAndPrint("", etc)
-  print("Total<br/>" .. total)
 |
-{{#SearchLine:{{{1}}}/_%|JASReference}}
+{{#invoke:JAS|TypeOfMutations|{{#var:list}}|{{{1|LDLR}}}}}
-}}
 |}
+</center>