Lipoquality:Database: Difference between revisions
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< | ; Homo sapiens : NIST plasma (SRM 1950) | ||
< | ; <nowiki>Mus musculus (background: C57BL/6J; diet: CE2, chows of PUFA-dietary controled studies)</nowiki> : Adrenal gland, Atrium, Brain, Brown adipose tissue, Cerebellum, Cortex, Epididymis, Eye, Feces, Heart, Kidney, Large intestine, Liver, Lung, Macrophage, Medulla, Pancreas, Plasma, Seminal, Skeletal muscle, Skin, Small intestine, Spleen, Stomach, Testis, Thymus, Tongue, Ventricle, White adipose tissue | ||
; Human cultured cell : HEK293, HeLa, Jurkat, LNCaP, PC3, TPC-1 | |||
; Mouse cultured cell : 3T3-L1, C2C12 | |||
; Plant : <i>Arabidopsis thaliana, Oryza sativa, Solanum melongena</i> | |||
; Algae : <i>Auxenochlorella protothecoides, Chlamydomonas reinhardtii, Chlorella sorokiniana, Chlorella variabilis, Dunaliella salina, Euglena gracilis, Nannochloropsis oculata, Pavlova lutheri, Pleurochrysis carterae</i> | |||
; Measurement : See [http://metabolonote.kazusa.or.jp/Main_Page Metabolonote] (see [http://metabolonote.kazusa.or.jp/SE196:/ SE196], [http://metabolonote.kazusa.or.jp/SE197:/ SE197]) database. | |||
< | <h1>Data download</h1> | ||
[http://jcbl.jp//lipodata/download/AllData_20200206.zip AllData_20200206.zip] Feb 6, 2020 (22M) | |||
< | <h1>{{Bilingual|脂質記載法|Notation}}</h1> | ||
The style follows the proposal for lipidomics nomenclature | |||
(Liebisch G et al. J Lipid Res 2013. PMID 23549332). Please visit [http://prime.psc.riken.jp/Metabolomics_Software/MS-DIAL/index5.html the MS-DIAL page] for more details. | |||
( | |||
{| | {| | ||
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|- | |- | ||
| R2-lyso-PA | | R2-lyso-PA | ||
| | | LPA | ||
|- | |- | ||
| Phosphatidyl-choline | | Phosphatidyl-choline | ||
| Line 51: | Line 35: | ||
|- | |- | ||
| R2-lyso-PC | | R2-lyso-PC | ||
| | | LPC | ||
|- | |- | ||
| R1-ether-PC | | R1-ether-PC | ||
| Line 60: | Line 44: | ||
|- | |- | ||
| R2-lyso-PE | | R2-lyso-PE | ||
| | | LPE | ||
|- | |- | ||
| R1-ether-PE | | R1-ether-PE | ||
| Line 69: | Line 53: | ||
|- | |- | ||
| R2-lyso-PI | | R2-lyso-PI | ||
| | | LPI | ||
|- | |- | ||
| Phosphatidyl-serine | | Phosphatidyl-serine | ||
| Line 75: | Line 59: | ||
|- | |- | ||
| R2-lyso-PS | | R2-lyso-PS | ||
| | | LPS | ||
|- | |- | ||
| Phosphatidyl-glycerol | | Phosphatidyl-glycerol | ||
| Line 81: | Line 65: | ||
|- | |- | ||
| R2-lyso-PG | | R2-lyso-PG | ||
| | | LPG | ||
|- | |- | ||
| Bis(monoacylglycero)phosphate | | Bis(monoacylglycero)phosphate | ||
| Line 87: | Line 71: | ||
|- | |- | ||
| 1-Monoacylglycerol-phospho-2,3-diacylglycerol | | 1-Monoacylglycerol-phospho-2,3-diacylglycerol | ||
| | | HBMP | ||
|- | |- | ||
| Cardiolipin | | Cardiolipin | ||
| Line 120: | Line 104: | ||
|- | |- | ||
| Glucuronosyl-diacylglycerol | | Glucuronosyl-diacylglycerol | ||
| | | DGGA | ||
|- | |- | ||
| Fatty acid | | Fatty acid | ||
| Line 129: | Line 113: | ||
|- | |- | ||
| Acylcarnitine | | Acylcarnitine | ||
| | | CAR | ||
|- | |- | ||
| Sphingomyelin | | Sphingomyelin | ||
| Line 141: | Line 125: | ||
! ''non-hydroxy FA''<br/>[N] | ! ''non-hydroxy FA''<br/>[N] | ||
! ''α-hydroxy FA''<br/>[A] | ! ''α-hydroxy FA''<br/>[A] | ||
! ''β-hydroxy FA'' <br/>[B] | |||
! ''esterified ω-hydroxy FA''<br/>[EO] | ! ''esterified ω-hydroxy FA''<br/>[EO] | ||
|- | |- | ||
! ''dihydrosphingosine''<br/>[DS] | ! ''dihydrosphingosine''<br/>[DS] | ||
| Cer | | Cer-NDS | ||
| Cer | | Cer-ADS | ||
| Cer | | Cer-BDS | ||
| Cer-EODS | |||
|- | |- | ||
! ''sphingosine''<br/>[S] | ! ''sphingosine''<br/>[S] | ||
| Cer | | Cer-NS | ||
| Cer | | Cer-AS | ||
| Cer | | Cer-BS | ||
| Cer-EOS | |||
|- | |- | ||
! ''phytosphingosine''<br/>[P] | ! ''phytosphingosine''<br/>[P] | ||
| Cer | | Cer-NP | ||
| Cer | | Cer-AP | ||
| Cer | | Cer-BP | ||
| Cer-EOP | |||
|- | |- | ||
! ''6-hydroxy sphingosine''<br/>[H] | ! ''6-hydroxy sphingosine''<br/>[H] | ||
| Cer | | Cer-NH | ||
| Cer | | Cer-AH | ||
| Cer | | Cer-BH | ||
| Cer-EOH | |||
|} | |} | ||
<references/> | <references/> | ||
Latest revision as of 00:14, 29 November 2023
- Homo sapiens
- NIST plasma (SRM 1950)
- Mus musculus (background: C57BL/6J; diet: CE2, chows of PUFA-dietary controled studies)
- Adrenal gland, Atrium, Brain, Brown adipose tissue, Cerebellum, Cortex, Epididymis, Eye, Feces, Heart, Kidney, Large intestine, Liver, Lung, Macrophage, Medulla, Pancreas, Plasma, Seminal, Skeletal muscle, Skin, Small intestine, Spleen, Stomach, Testis, Thymus, Tongue, Ventricle, White adipose tissue
- Human cultured cell
- HEK293, HeLa, Jurkat, LNCaP, PC3, TPC-1
- Mouse cultured cell
- 3T3-L1, C2C12
- Plant
- Arabidopsis thaliana, Oryza sativa, Solanum melongena
- Algae
- Auxenochlorella protothecoides, Chlamydomonas reinhardtii, Chlorella sorokiniana, Chlorella variabilis, Dunaliella salina, Euglena gracilis, Nannochloropsis oculata, Pavlova lutheri, Pleurochrysis carterae
- Measurement
- See Metabolonote (see SE196, SE197) database.
Data download
AllData_20200206.zip Feb 6, 2020 (22M)
Notation
The style follows the proposal for lipidomics nomenclature (Liebisch G et al. J Lipid Res 2013. PMID 23549332). Please visit the MS-DIAL page for more details.
|
|
- Ceramide symbols[1]
| non-hydroxy FA [N] |
α-hydroxy FA [A] |
β-hydroxy FA [B] |
esterified ω-hydroxy FA [EO] | |
|---|---|---|---|---|
| dihydrosphingosine [DS] |
Cer-NDS | Cer-ADS | Cer-BDS | Cer-EODS |
| sphingosine [S] |
Cer-NS | Cer-AS | Cer-BS | Cer-EOS |
| phytosphingosine [P] |
Cer-NP | Cer-AP | Cer-BP | Cer-EOP |
| 6-hydroxy sphingosine [H] |
Cer-NH | Cer-AH | Cer-BH | Cer-EOH |
- ↑ Masukawa Y et al. "Characterization of overall ceramide species in human stratum corneums" J Lipid Res 49:1466-1476, 2008
