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| {| class="wikitable" border="1" cellpadding="2" cellspacing="1" margin: 1em 1em 1em 1em" | | {| class="wikitable" border="1" cellpadding="2" cellspacing="1" margin: 1em 1em 1em 1em" |
| |+ Classification by Chain Length [[Image:LBF.png|100px]]
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| |- valign="top" | | |- valign="top" |
| |align="center"| LBAA: archaeol | | |align="center"| A: archaeol |
| |align="center"| LBAH: hydroxy archaeol | | |align="center"| H: hydroxy archaeol |
| |align="center"| LBAU: unsaturated (alkenyl) archaeol | | |align="center"| U: unsaturated (alkenyl) archaeol |
| |- | | |- |
| |align="center"| LBAC: caldachaeol | | |align="center"| C: caldachaeol |
| |align="center"| LBAD: calditocaldarchaeol | | |align="center"| D: calditocaldarchaeol |
| |align="center"| LBAY: cyclic archaeol | | |align="center"| Y: cyclic archaeol |
| |} | | |} |
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Revision as of 01:46, 9 March 2013
Archaeal Lipid
Upper classes:
LB
Class Overview
Archaeal lipid is composed of sn-glycerol 1-phosphate and isoprenoids. This composition is different from lipid in eubacteria and eukaryotes, which comprises of sn-glycerol 3-phosphate and fatty acids. Responsible enzymes are also non-homologous. Archaea also contains tetraether lipid
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アーキア古細菌と呼ばれることが多いのですが、真性細菌と明確に区別するためにここではアーキアと記します。の脂質は、
sn-グリセロール1リン酸にイソプレン骨格がエーテル結合しています。
これは、グリセロール3リン酸と脂肪酸を利用する真性細菌や真核生物と全く異なる構造で、生合成をおこなう酵素も相同ではありません。またテトラエーテル型と呼ばれるイソプレン骨格が末端で重合した環状脂質も広く存在し、これが単分子膜を形成すると考えられています。
|
Archaea are separated into two phyla which show three different characters (Table 1: leftmost column).
|
アーキアの系統はcrenarchaeotaとeuryarchaetaに分かれますが、
特徴からみると三通りになります（表の最左カラム）。
|
Table 1. Clades in Archaea
| Character |
Phyrum (綱) |
Order (目) |
Family (科)
|
Non-methanogenic
thermophils
|
crenarchaeota
|
desulfurococcales |
desulfurococcaceae, pyrodictiaceae
|
| sulfolobales |
sulfolobaceae
|
| thermoproteales |
thermoproteaceae
|
| euryarchaeota
|
thermococcales |
thermococcaceae
|
| thermoplasmatales |
thermoplasmataceae
|
| Halophils
|
halobacteriales |
halobacteriaceae
|
| Methanogens
|
methanobacteriales |
methanobacteriaceae, methanothermaceae
|
| methanococcales |
methanococcaceae, methanocaldococcaceae
|
| methanomicrobiales |
methanomicrobiaceae, methanospirillaceae
|
| methanopyrales |
methanopyraceae
|
| methanosarcinales |
methanosarcinaceae, methanosaetaceae
|
Table 2. Genus Names in This Database
| Family (科) |
Genus (属)
|
| desulfurococcaceae |
Aeropyrum, Desulfurococcus
|
| pyrodictiaceae |
Pyrolobus
|
| sulfolobales |
Acidianus, Sulfolobus
|
| thermoproteaceae |
Pyrobaculum, Thermoproteus
|
| thermococcaceae |
Pyrococcus, Thermococcus
|
| thermoplasmataceae |
Thermoplasma
|
| halobacteriaceae |
Haloarcula, Halobacterium, Halococcus, Haloferax, Halorubrum, Natrialba, Natronobacterium, Notronococcus
|
| methanobacteriaceae |
Methanobacterium, Methanobrevibacter, Methanosphaera, Methanothermobacter
|
| methanococcaceae |
Methanothermococcus, Methanococcus
|
| methanocaldococcaceae |
Methanocaldococcus
|
| methanomicrobiaceae |
Methanomicrobium
|
| methanospirillaceae |
Mehtanospirillum
|
| methanopyraceae |
Mehtanospirillum
|
| methanosarcinaceae |
Methanococcoides, Methanohalophilus, Methanolobus, Methanosarcina
|
以下に示す種は名前に気をつけてください。（旧→新）
- Methanosaeta concilii → Methanothrix soehngenii (detail)
- Halobacterium sodomense → Halorubrum sodomense (detail)
- Halobacterium lacusprofundi → Halorubrum lacusprofundi (detail)
- Caldariella acidophila → Sulfolobus solfataricus
Design of Fat acyl Page Titles
Each page title contains chain-length, degree of unsaturation, position of double bonds, and backbone structure (branches, peroxidation, or prostanoids etc.).
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各分子のページタイトルに鎖長、不飽和度、二重結合の位置、骨格タイプ（分岐や過酸化、プロスタノイドなど）がコード化されています。
|
9-DIGIT
- x ... backbone type
- y ... polar-head type
- z ... sugar type
- w ... number of sugars
- c ... serial number
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- x ... バックボーンの構造
- y ... 極性基（リン酸部分）の構造
- z ... 糖のタイプ
- w ... 糖の個数
- c ... 通し番号
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Classification 分類
Backbone Structure 基本構造
| A: archaeol
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H: hydroxy archaeol
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U: unsaturated (alkenyl) archaeol
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| C: caldachaeol
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D: calditocaldarchaeol
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Y: cyclic archaeol
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{{#lua:
desulfurococcales = {A=false,H=false,U=false,C=false,D=false,Y=false}
sulfolobales = {A=false,H=false,U=false,C=false,D=false,Y=false}
thermoproteales = {A=false,H=false,U=false,C=false,D=false,Y=false}
thermococcales = {A=false,H=false,U=false,C=false,D=false,Y=false}
thermoplasmatales = {A=false,H=false,U=false,C=false,D=false,Y=false}
halobacteriales = {A=false,H=false,U=false,C=false,D=false,Y=false}
methanobacteriales = {A=false,H=false,U=false,C=false,D=false,Y=false}
methanococcales = {A=false,H=false,U=false,C=false,D=false,Y=false}
methanomicrobiales = {A=false,H=false,U=false,C=false,D=false,Y=false}
methanopyrales = {A=false,H=false,U=false,C=false,D=false,Y=false}
methanosarcinales = {A=false,H=false,U=false,C=false,D=false,Y=false}
for ref, sp, id in stdin:gmatch("|?|?([%w\. ]+)||([%w\., ]+)||([^\n]+)") do
if (string.match(sp,"Aeropyrum") or string.match(sp,"Desulfurococcus") or string.match(sp,"Pyrolobus"))
then desulfurococcales[ string.sub(id,4,4) ] = true
elseif (string.match(sp,"Acidianus") or string.match(sp,"Sulfolobus"))
then sulfolobales[ string.sub(id,4,4) ] = true
elseif (string.match(sp,"Pyrobaculum") or string.match(sp,"Thermoproteus"))
then thermoproteales[ string.sub(id,4,4) ] = true
elseif (string.match(sp,"Pyrococcus") or string.match(sp,"Thermococcus"))
then thermococcales[ string.sub(id,4,4) ] = true
elseif (string.match(sp,"Thermoplasma"))
then thermoplasmatales[ string.sub(id,4,4) ] = true
elseif (string.match(sp,"Haloarcula") or string.match(sp,"Halobacterium") or string.match(sp,"Halococcus") or string.match(sp,"Haloferax") or string.match(sp,"Halorubrum") or string.match(sp,"Natrialba") or string.match(sp,"Natronobacterium") or string.match(sp,"Natronococcus"))
then halobacteriales[ string.sub(id,4,4) ] = true
elseif (string.match(sp,"Methanobacterium") or string.match(sp,"Methanobrevibacter") or string.match(sp,"Methanosphaera") or string.match(sp,"Methanothermobacter"))
then methanobacteriales[ string.sub(id,4,4) ] = true
elseif (string.match(sp,"Methanothermococcus") or string.match(sp,"Methanococcus") or string.match(sp,"Methanocaldococcus"))
then methanococcales[ string.sub(id,4,4) ] = true
elseif (string.match(sp,"Methanomicrobium") or string.match(sp,"Methanospirillum"))
then methanomicrobiales[ string.sub(id,4,4) ] = true
elseif (string.match(sp,"Methanopyrus"))
then methanopyrales[ string.sub(id,4,4) ] = true
elseif (string.match(sp,"Methanococcoides") or string.match(sp,"Methanohalophilus") or string.match(sp,"Methanolobus") or string.match(sp,"Methanosarcina"))
then methanosarcinales[ string.sub(id,4,4) ] = true
end
end
print("\n|-\n|desulfurococcales || ") for k,v in pairs(desulfurococcales) do print(k,v) end
print("\n|-\n|sulfolobales || ") for k,v in pairs(sulfolobales) do print(k,v) end
print("\n|-\n|thermoproteales || ") for k,v in pairs(thermoproteales) do print(k,v) end
print("\n|-\n|thermococcales || ") for k,v in pairs(thermococcales) do print(k,v) end
print("\n|-\n|thermoplasmatales || ") for k,v in pairs(thermoplasmatales) do print(k,v) end
print("\n|-\n|halobacteriales || ") for k,v in pairs(halobacteriales) do print(k,v) end
print("\n|-\n|methanobacteriales || ") for k,v in pairs(methanobacteriales) do print(k,v) end
print("\n|-\n|methanococcales || ") for k,v in pairs(methanococcales) do print(k,v) end
print("\n|-\n|methanomicrobiales || ") for k,v in pairs(methanomicrobiales) do print(k,v) end
print("\n|-\n|methanopyrales || ") for k,v in pairs(methanopyrales) do print(k,v) end
print("\n|-\n|mehtanosarcinales || ") for k,v in pairs(methanosarcinales) do print(k,v) end
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