Template:LBS/FormatSugar: Difference between revisions
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local seq = stdin:match("[%S()%[%], ]+"); | local seq = stdin:match("[%S()%[%], ]+"); | ||
local ret = ""; | local ret = ""; | ||
seq = string.gsub(seq, "a/b([1-9?] | seq = string.gsub(seq, "a/b([1-9?]?-[1-9/?]*)", "<sub>α/β%1</sub>"); | ||
seq = string.gsub(seq, "a([1-9?] | seq = string.gsub(seq, "a([1-9?]?-[1-9/?]*)", "<sub>α%1</sub>"); | ||
seq = string.gsub(seq, "b([1-9?] | seq = string.gsub(seq, "b([1-9?]?-[1-9/?]*)", "<sub>β%1</sub>"); | ||
seq = string.gsub(seq, "?([1-9?] | seq = string.gsub(seq, "?([1-9?]?-[1-9/?]*)", "<sub>?%1</sub>"); | ||
seq = string.gsub(seq, "Cer$", "<b>Cer</b>"); | seq = string.gsub(seq, "Cer$", "<b>Cer</b>"); | ||
seq = string.gsub(seq, "(Gal[NAcH234Me]*)", '<span style="color:Gold"><b>%1</b></span>'); | seq = string.gsub(seq, "(Gal[NAcH234Me]*)", '<span style="color:Gold"><b>%1</b></span>'); | ||
| Line 18: | Line 18: | ||
seq = string.gsub(seq, "(KDN)", '<span style="color:Green"><b>%1</b></span>'); | seq = string.gsub(seq, "(KDN)", '<span style="color:Green"><b>%1</b></span>'); | ||
print(seq); | print(seq); | ||
|{{{1| | |{{{1|GlcNAca/b1-3Xyla-4Galb1-3GalNAca1-4(NeuAc?1-2NeuGc4Mea1-3)GalNAcb1-4(EtnP-6)GlcNAcb1-3Manb1-4Glcb1-1Cer}}}}} | ||
Revision as of 09:48, 20 November 2014
{{#lua:
local seq = stdin:match("[%S()%[%], ]+");
local ret = "";
seq = string.gsub(seq, "a/b([1-9?]?-[1-9/?]*)", "α/β%1");
seq = string.gsub(seq, "a([1-9?]?-[1-9/?]*)", "α%1");
seq = string.gsub(seq, "b([1-9?]?-[1-9/?]*)", "β%1");
seq = string.gsub(seq, "?([1-9?]?-[1-9/?]*)", "?%1");
seq = string.gsub(seq, "Cer$", "Cer");
seq = string.gsub(seq, "(Gal[NAcH234Me]*)", '%1');
seq = string.gsub(seq, "(Glc[NAcH2]*)", '%1');
seq = string.gsub(seq, "(Man[A]*)", '%1');
seq = string.gsub(seq, "(Rha)", '%1');
seq = string.gsub(seq, "(Fuc[A]*)", '%1');
seq = string.gsub(seq, "(NeuAc[Me489]*)", '%1');
seq = string.gsub(seq, "(NeuGc[Me489]*)", '%1');
seq = string.gsub(seq, "(Xyl)", '%1');
seq = string.gsub(seq, "(Ara)", '%1');
seq = string.gsub(seq, "(KDN)", '%1');
print(seq);
|GlcNAca/b1-3Xyla-4Galb1-3GalNAca1-4(NeuAc?1-2NeuGc4Mea1-3)GalNAcb1-4(EtnP-6)GlcNAcb1-3Manb1-4Glcb1-1Cer}}
