Template:JAS/MutationStat: Difference between revisions

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{{#def:list|{{#SearchLine:{{{1}}}/_%|JASReference}}}}
{{#def:list|{{#SearchLine:&&{{{1|LDLR}}}/|JASReference}}}}
<center>
<center>
{| class="wikitable" style="text-align:center;width:100%"
{| class="wikitable" style="text-align:center;width:100%"
|+ The number of mutations <small>(E = exon; I = intron)</small>
|+ The number of mutations <small>(E = exon; I = intron)</small>
|
|
{{#lua:
{{#invoke:JAS|NumberOfMutations|{{#var:list}} }}
  function SortAndPrint(prefix, T)
    local idx = {}
    for k,v in pairs(T) do
      table.insert(idx, k)
    end
    table.sort(idx)
    for i=1, #idx do
      print(prefix .. idx[i] .. "<br/>" .. T[idx[i]] .."\n{{#bar:}}")
    end
  end
 
  local exn = {}
  local inn = {}
  local etc = {}
  local total =0
  for gene in stdin:gmatch("&&([-%w]+)\n") do
    total = total+1
    local n = tonumber(string.match(gene,"(%d+)"))
    if (string.match(gene,"exon")) then
      if (exn[n] == nil) then exn[n] = 1 else exn[n] = exn[n]+1 end
    elseif (string.match(gene,"intron")) then
      if (inn[n] == nil) then inn[n] = 1 else inn[n] = inn[n]+1 end
    else
      if (etc[gene] == nil) then etc[gene] = 1 else etc[gene] = etc[gene]+1 end
    end
  end
  SortAndPrint("E", exn)
  SortAndPrint("I", inn)
  SortAndPrint("", etc)
  print("Total<br/>" .. total)
|{{#var:list}} }}
|}
|}


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|+ The type of mutations
|+ The type of mutations
|
|
{{#lua:
{{#invoke:JAS|TypeOfMutations|{{#var:list}}|{{{1|LDLR}}}}}
  local M=0 D=0 I=0 DI=0 O=0 U=0
  local total =0
  for type in stdin:gmatch("&&{{{1}}}/(%w+)/%S+\n") do
    total = total+1
    if (string.match(type,"Mut")) then M = M+1
    elseif (string.match(type,"Ins")) then I = I+1
    elseif (string.match(type,"Del")) then D = D+1
    elseif (string.match(type,"DelIns")) then DI = DI+1
    elseif (string.match(type,"Dup")) then U = U+1
    else O = O+1
    end
  end
  print("Single-nucleotide<br/>mutation<br/>" .. M .. "\n{{#bar:}}Deletion<br/>" .. D .. "\n{{#bar:}}Insertion<br/>" .. I .. "\n{{#bar:}}Del&Ins<br/>" .. DI .. "\n{{#bar:}}Dup<br/>" .. U .. "\n{{#bar:}}Others<br/>" .. O)
  print("\n{{#bar:}}Total<br/>" .. total)
|{{#var:list}} }}
|}
|}
</center>
</center>

Latest revision as of 02:34, 31 January 2023

The number of mutations (E = exon; I = intron)

E1
5

E2
10 		E3
8 		E4
22 		E5
3 		E6
3 		E7
7 		E8
9 		E9
10 		E10
3 		E11
8 		E12
4 		E13
4 		E14
8 		E15
4 		E16
4 		E17
1 		I10
1 		I12
1 		I15
1 		Exon15
1 		promoter
2 		Total
119
The type of mutations

Single-nucleotide
mutation
75

Deletion
30 		Insertion
10 		Del&Ins
1 		Duplication
5 		Others
0 		Total
121
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