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| |+ The number of mutations <small>(E = exon; I = intron)</small> | | |+ The number of mutations <small>(E = exon; I = intron)</small> |
| | | | | |
| {{#lua: | | {{#invoke:JAS|NumberOfMutations|{{#var:list}} }} |
| function SortAndPrint(prefix, T)
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| local idx = {}
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| for k,v in pairs(T) do
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| table.insert(idx, k)
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| end
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| table.sort(idx)
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| for i=1, #idx do
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| print(prefix .. idx[i] .. "<br/>" .. T[idx[i]] .."\n{{#bar:}}")
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| end
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| end
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| | |
| local exn = {}
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| local inn = {}
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| local etc = {}
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| local total =0
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| for gene in stdin:gmatch("&&([-%w]+)\n") do
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| total = total+1
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| local n = tonumber(string.match(gene,"(%d+)"))
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| if (string.match(gene,"exon")) then
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| if (exn[n] == nil) then exn[n] = 1 else exn[n] = exn[n]+1 end
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| elseif (string.match(gene,"intron")) then
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| if (inn[n] == nil) then inn[n] = 1 else inn[n] = inn[n]+1 end
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| else
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| if (etc[gene] == nil) then etc[gene] = 1 else etc[gene] = etc[gene]+1 end
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| end
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| end
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| SortAndPrint("E", exn)
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| SortAndPrint("I", inn)
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| SortAndPrint("", etc)
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| print("Total<br/>" .. total)
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| |{{#var:list}} }} | |
| |} | | |} |
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| |+ The type of mutations | | |+ The type of mutations |
| | | | | |
| {{#lua: | | {{#invoke:JAS|TypeOfMutations|{{#var:list}}|{{{1|LDLR}}}}} |
| local M=0 D=0 I=0 DI=0 O=0 U=0
| |
| local total =0
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| for type in stdin:gmatch("&&{{{1|LDLR}}}/(%w+)/%S+\n") do
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| total = total+1
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| if (string.match(type,"Mut")) then M = M+1
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| elseif (string.match(type,"DelIns")) then DI = DI+1
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| elseif (string.match(type,"Ins")) then I = I+1
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| elseif (string.match(type,"Del")) then D = D+1
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| elseif (string.match(type,"Dup")) then U = U+1
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| else O = O+1
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| end
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| end
| |
| print("Single-nucleotide<br/>mutation<br/>" .. M .. "\n{{#bar:}}Deletion<br/>" .. D .. "\n{{#bar:}}Insertion<br/>" .. I .. "\n{{#bar:}}Del&Ins<br/>" .. DI .. "\n{{#bar:}}Duplication<br/>" .. U .. "\n{{#bar:}}Others<br/>" .. O)
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| print("\n{{#bar:}}Total<br/>" .. total)
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| |{{#var:list}} }}
| |
| |} | | |} |
| </center> | | </center> |
