Category:LBS/Search: Difference between revisions

Revision as of 13:34, 30 November 2017

{{#includejs:LBSSearch.js}} {{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}} {{#includejs:GlycosphingolipidMassCalculator.js}} {{#includejs:AdvancedLBSSearch.js}} under construction

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Search from Specific Sugars

Search from the non-reducing end pattern (click "Show" to expand the table)

Name	Structure
1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group A	GalNAc_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group B	Gal_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3GlcNAcb1-3\|Blood group H	Fuc_α1-2Gal_β1-3GlcNAc_β1-3-R
1=Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^a	Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^b	Fuc_α1-2Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3\|sialyl-Lewis^a	NeuAc_α2-3Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^x, SSEA-1	Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^y	Fuc_α1-2Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3\|sialyl-Lewis ^x	NeuAc_α2-3Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1\|Forssman antigen	GalNAc_α1-3GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R
1=Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1\|P antigen	GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R

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{{#persist:ListMainchain|List mainchain|ListMainchain|0|dummy|;}}

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Glycosphingolipid Mass Calculator for MS Analysis

Exact Mass	Nominal Mass	Formula

Carbohydrates

Hexose

HexNAc

NeuAc

NeuGc

Fucose

HexA

Fatty Acids

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Hydroxy group

Polarity

Long Chain Bases

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@@ Line 4: / Line 4: @@
 {{#includejs:AdvancedLBSSearch.js}}
 <span style="color: red; font-size: x-large">under construction</span>
-<!--DEFINITIONS-->{{#def:Hexose|Glc..-.~Galf?..-[1-9/]+~Man..-.}} {{#def:HexNAc|GlcNAc([1-6]Me)?..-.~GalNAc([1-6]Me)?..-.}} {{#def:HexA|GlcA([1-6]Me)?..-.|GalA([1-6]Me)?..-.}} {{#def:Fucose|([1-6]-Deoxy-)?Fuc([1-6]Me)?}} {{#def:NeuAc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuAc([1-9]Me|[1-9]Methoxy)?}} {{#def:NeuGc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuGc([1-9]Me|[1-9]Methoxy)?}}
+<!--DEFINITIONS--> {{#def:Hexose|((Glc)~(Gal)~(Man)~(Ino))[-abfp0-9]*}} {{#def:HexNAc|((GlcNAc)~(GalNAc))[-abfp0-9]*}} {{#def:HexA|((GlcA)~(GalA))[-abfp0-9]*}} {{#def:Fucose|([1-6]-Deoxy-)?Fuc([1-6]Me)?}} {{#def:NeuAc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuAc([1-9]Me|[1-9]Methoxy)?}} {{#def:NeuGc|([4-9]-Deoxy-|8-Epi-|Taurine-|C[1-9]-)?NeuGc([1-9]Me|[1-9]Methoxy)?}}
 ==Search from Structure==
 <ul>
@@ Line 14: / Line 14: @@
 {{#formtag:legend||Search from the non-reducing end pattern (click "Show" to expand the table)}}
 }} <table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
-  <tr><th>Name</th><th>Structure</th></tr>
+  <tr><th>Name</th><th width="300px">Structure</th></tr>
   <tr><td>[[Volatile:ListMol/LBS|1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3|Blood group A]]</td><td>{{LBS/FormatSugar|GalNAca1-3(Fuca1-2)Galb1-3GlcNAcb1-3-R}}</td></tr>
@@ Line 37: / Line 37: @@
   <tr>
    <td>{{#formtag:select|name="nre" id="nre"|<option value="">(Non-reducing end)</option><option value=".*" selected="yes">(any)</option>}}</td>
-   <td>{{#formtag:select|name="4th" id="4th"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-.">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-.">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="Neu[AG]c[1-9]?α2-.">NeuAc/NeuGc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
+   <td>{{#formtag:select|name="4th" id="4th"|<option value={{#var:Hexose}}>Hexose-</option><option value={{#var:HexNAc}}>HexNAc-</option><option value={{#var:HexA}}>HexA-</option><option value={{#var:Fucose}}>Fucose-</option><option value={{#var:NeuAc}}>NeuAc-</option><option value={{#var:NeuGc}}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="3rd" id="3th"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-.">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-." selected="yes">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="Neu[AG]c[1-9]?α2-.">NeuAc/NeuGc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
+   <td>{{#formtag:select|name="3rd" id="3rd"|<option value={{#var:Hexose}}>Hexose-</option><option value={{#var:HexNAc}}>HexNAc-</option><option value={{#var:HexA}}>HexA-</option><option value={{#var:Fucose}}>Fucose-</option><option value={{#var:NeuAc}}>NeuAc-</option><option value={{#var:NeuGc}}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="Gala[1-9]?-.">Galα-</option><option value="Galb[1-9]?-." selected="yes">Galβ-</option><option value="Glcb.-.">Glcβ-</option><option value="Manb[1-9]?-.">Manβ-.</option><option value="GalNAcb[1-9]?-.">GalNAcβ-</option><option value="GlcNAcb[1-9]?-.">GlcNAcβ-</option><option value="Glc[AN].[1-9]?-.">GlcN/GlcA-</option><option value="NeuAc[1-9]?α2-.">NeuAc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
+   <td>{{#formtag:select|name="2nd" id="2nd"|<option value={{#var:Hexose}}>Hexose-</option><option value={{#var:HexNAc}}>HexNAc-</option><option value={{#var:HexA}}>HexA-</option><option value={{#var:Fucose}}>Fucose-</option><option value={{#var:NeuAc}}>NeuAc-</option><option value={{#var:NeuGc}}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="1st" id="1st"|<option value="Gala[1-9]?-">Galα-</option><option value="Galb[1-9]?-">Galβ-</option><option value="Glcb.-" selected="yes">Glcβ-</option><option value="NeuAc..-">NeuAc-</option><option value="Ins-P-">Ins-P-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
+   <td>{{#formtag:select|name="1st" id="1st"|<option value={{#var:Hexose}}>Hexose-</option><option value={{#var:HexNAc}}>HexNAc-</option><option value={{#var:HexA}}>HexA-</option><option value={{#var:Fucose}}>Fucose-</option><option value={{#var:NeuAc}}>NeuAc-</option><option value={{#var:NeuGc}}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
    <td>-</td>
    <td>{{#formtag:select|name="re"  id="re" |<option value="(Cer~Sph)">Cer/Sph</option><option value=".+">(any)</option>}}</td>

Category:LBS/Search: Difference between revisions

Revision as of 13:34, 30 November 2017

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