Category:LBS/Search: Difference between revisions

Revision as of 22:44, 30 November 2017

{{#includejs:LBSSearch.js}} {{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}} {{#includejs:GlycosphingolipidMassCalculator.js}} {{#includejs:AdvancedLBSSearch.js}} under construction

Search from Structure

Search from Sphingolipid Major Series
Search from Specific Sugars

Search from the non-reducing end pattern (click "Show" to expand the table)

Name	Structure
1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group A	GalNAc_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group B	Gal_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3GlcNAcb1-3\|Blood group H	Fuc_α1-2Gal_β1-3GlcNAc_β1-3-R
1=Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^a	Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^b	Fuc_α1-2Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3\|sialyl-Lewis^a	NeuAc_α2-3Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^x, SSEA-1	Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^y	Fuc_α1-2Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3\|sialyl-Lewis ^x	NeuAc_α2-3Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1\|Forssman antigen	GalNAc_α1-3GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R
1=Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1\|P antigen	GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R

Search from the polysaccharide sequence

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{{#persist:ListMainchain|List mainchain|ListMainchain|0|dummy|;}}

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Glycosphingolipid Mass Calculator for MS Analysis

Exact Mass	Nominal Mass	Formula

Carbohydrates

Hexose

HexNAc

NeuAc

NeuGc

Fucose

HexA

Fatty Acids

Carbon No.

Unsaturation

Hydroxy group

Polarity

Long Chain Bases

Carbon No.

Unsaturation

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Adduct Ions

Na

K

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@@ Line 39: / Line 39: @@
    <td>{{#formtag:select|name="4th" id="4th"|<option value="{{#var:Hexose}}">Hexose-</option><option value="{{#var:HexNAc}}">HexNAc-</option><option value="{{#var:HexA}}">HexA-</option><option value="{{#var:Fucose}}">Fucose-</option><option value="{{#var:NeuAc}}">NeuAc-</option><option value="{{#var:NeuGc}"}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="3rd" id="3rd"|<option value="{{#var:Hexose}}">Hexose-</option><option value="{{#var:HexNAc}}">HexNAc-</option><option value="{{#var:HexA}}">HexA-</option><option value="{{#var:Fucose}}">Fucose-</option><option value="{{#var:NeuAc}}">NeuAc-</option><option value="{{#var:NeuGc}"}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
+   <td>{{#formtag:select|name="3rd" id="3rd"|<option value="{{#var:Hexose}}">Hexose-</option><option value="{{#var:HexNAc}}">HexNAc-</option><option value="{{#var:HexA}}">HexA-</option><option value="{{#var:Fucose}}">Fucose-</option><option value="{{#var:NeuAc}}" selected="yes">NeuAc-</option><option value="{{#var:NeuGc}"}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="{{#var:Hexose}}">Hexose-</option><option value="{{#var:HexNAc}}">HexNAc-</option><option value="{{#var:HexA}}">HexA-</option><option value="{{#var:Fucose}}">Fucose-</option><option value="{{#var:NeuAc}}">NeuAc-</option><option value="{{#var:NeuGc}"}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
+   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="{{#var:Hexose}}" selected="yes">Hexose-</option><option value="{{#var:HexNAc}}">HexNAc-</option><option value="{{#var:HexA}}">HexA-</option><option value="{{#var:Fucose}}">Fucose-</option><option value="{{#var:NeuAc}}">NeuAc-</option><option value="{{#var:NeuGc}"}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="1st" id="1st"|<option value="{{#var:Hexose}}">Hexose-</option><option value="{{#var:HexNAc}}">HexNAc-</option><option value="{{#var:HexA}}">HexA-</option><option value="{{#var:Fucose}}">Fucose-</option><option value="{{#var:NeuAc}}">NeuAc-</option><option value="{{#var:NeuGc}"}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
+   <td>{{#formtag:select|name="1st" id="1st"|<option value="{{#var:Hexose}}" selected="yes">Hexose-</option><option value="{{#var:HexNAc}}">HexNAc-</option><option value="{{#var:HexA}}">HexA-</option><option value="{{#var:Fucose}}">Fucose-</option><option value="{{#var:NeuAc}}">NeuAc-</option><option value="{{#var:NeuGc}"}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
    <td>-</td>
    <td>{{#formtag:select|name="re"  id="re" |<option value="(Cer~Sph)">Cer/Sph</option><option value=".+">(any)</option>}}</td>

Category:LBS/Search: Difference between revisions

Revision as of 22:44, 30 November 2017

Search from Structure

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