Category:LBS/Search: Difference between revisions

Revision as of 13:57, 30 November 2017

{{#includejs:LBSSearch.js}} {{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}} {{#includejs:GlycosphingolipidMassCalculator.js}} {{#includejs:AdvancedLBSSearch.js}} under construction

Search from Structure

Search from Sphingolipid Major Series
Search from Specific Sugars

Search from the non-reducing end pattern (click "Show" to expand the table)

Name	Structure
1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group A	GalNAc_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group B	Gal_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3GlcNAcb1-3\|Blood group H	Fuc_α1-2Gal_β1-3GlcNAc_β1-3-R
1=Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^a	Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^b	Fuc_α1-2Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3\|sialyl-Lewis^a	NeuAc_α2-3Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^x, SSEA-1	Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^y	Fuc_α1-2Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3\|sialyl-Lewis ^x	NeuAc_α2-3Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1\|Forssman antigen	GalNAc_α1-3GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R
1=Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1\|P antigen	GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R

Search from the polysaccharide sequence

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Advanced keyword search
Non-reducing end

All Polysaccharide Sequences

{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}}

Search From Mass

Mass calculator

Formula

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Precursor Mass (polysaccharide part only) → Product Masses (comma separated) (tolerance )

Glycosphingolipid Mass Calculator for MS Analysis

Exact Mass	Nominal Mass	Formula

Carbohydrates

Hexose

HexNAc

NeuAc

NeuGc

Fucose

HexA

Fatty Acids

Carbon No.

Unsaturation

Hydroxy group

Polarity

Long Chain Bases

Carbon No.

Unsaturation

Hydroxy group

Adduct Ions

Na

K

Ammonium

Modification

Sulfate

Phosphate

Methyl

Acetyl

Lactone

Display setting

limit/page

order

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@@ Line 11: / Line 11: @@
 <li> [[:Category:LBS#SphingolipidSugar|Search from Specific Sugars]]
-<li> {{#formtag:fieldset||
+<li> Search from the non-reducing end pattern (click "Show" to expand the table)
-{{#formtag:legend||Search from the non-reducing end pattern (click "Show" to expand the table)}}
+<table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
-}} <table class="wikitable collapsible collapsed" style="text-align:right; background-color:white; margin-left: 1.5em">
   <tr><th>Name</th><th width="300px">Structure</th></tr>
@@ Line 33: / Line 32: @@
 </table>
-<li> {{#formtag:fieldset|| {{#formtag:legend||Search from the polysaccharide sequence}}
+<li> Search from the polysaccharide sequence {{#formtag:fieldset||
 <table>
   <tr>
    <td>{{#formtag:select|name="nre" id="nre"|<option value="">(Non-reducing end)</option><option value=".*" selected="yes">(any)</option>}}</td>
-   <td>{{#formtag:select|name="4th" id="4th"|<option value="{{#var:Hexose}}">Hexose-</option><option value="{{#var:HexNAc}}">HexNAc-</option><option value="{{#var:HexA}}">HexA-</option><option value="{{#var:Fucose}}">Fucose-</option><option value="{{#var:NeuAc}}">NeuAc-</option><option value="{{#var:NeuGc}"}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
+   <td>{{#formtag:select|name="4th" id="4th"|<option value="{{#var:Hexose}}">Hexose</option><option value="{{#var:HexNAc}}">HexNAc</option><option value="{{#var:HexA}}">HexA</option><option value="{{#var:Fucose}}">Fucose</option><option value="{{#var:NeuAc}}">NeuAc</option><option value="{{#var:NeuGc}"}>NeuGc</option><option value="[^-]*-[1-9]?">Others</option><option value="" selected="yes">(none)</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="3rd" id="3rd"|<option value="{{#var:Hexose}}">Hexose-</option><option value="{{#var:HexNAc}}">HexNAc-</option><option value="{{#var:HexA}}">HexA-</option><option value="{{#var:Fucose}}">Fucose-</option><option value="{{#var:NeuAc}}" selected="yes">NeuAc-</option><option value="{{#var:NeuGc}"}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
+   <td>{{#formtag:select|name="3rd" id="3rd"|<option value="{{#var:Hexose}}">Hexose</option><option value="{{#var:HexNAc}}">HexNAc</option><option value="{{#var:HexA}}">HexA</option><option value="{{#var:Fucose}}">Fucose</option><option value="{{#var:NeuAc}}" selected="yes">NeuAc</option><option value="{{#var:NeuGc}"}>NeuGc</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="{{#var:Hexose}}" selected="yes">Hexose-</option><option value="{{#var:HexNAc}}">HexNAc-</option><option value="{{#var:HexA}}">HexA-</option><option value="{{#var:Fucose}}">Fucose-</option><option value="{{#var:NeuAc}}">NeuAc-</option><option value="{{#var:NeuGc}"}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
+   <td>{{#formtag:select|name="2nd" id="2nd"|<option value="{{#var:Hexose}}" selected="yes">Hexose</option><option value="{{#var:HexNAc}}">HexNAc</option><option value="{{#var:HexA}}">HexA</option><option value="{{#var:Fucose}}">Fucose</option><option value="{{#var:NeuAc}}">NeuAc</option><option value="{{#var:NeuGc}"}>NeuGc</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
    <td>-</td>
-   <td>{{#formtag:select|name="1st" id="1st"|<option value="{{#var:Hexose}}" selected="yes">Hexose-</option><option value="{{#var:HexNAc}}">HexNAc-</option><option value="{{#var:HexA}}">HexA-</option><option value="{{#var:Fucose}}">Fucose-</option><option value="{{#var:NeuAc}}">NeuAc-</option><option value="{{#var:NeuGc}"}>NeuGc-</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
+   <td>{{#formtag:select|name="1st" id="1st"|<option value="{{#var:Hexose}}" selected="yes">Hexose</option><option value="{{#var:HexNAc}}">HexNAc</option><option value="{{#var:HexA}}">HexA</option><option value="{{#var:Fucose}}">Fucose</option><option value="{{#var:NeuAc}}">NeuAc</option><option value="{{#var:NeuGc}"}>NeuGc</option><option value="[^-]*-[1-9]?">Others</option><option value="">(none)</option>}}</td>
    <td>-</td>
    <td>{{#formtag:select|name="re"  id="re" |<option value="(Cer~Sph)">Cer/Sph</option><option value=".+">(any)</option>}}</td>
+  <td>&nbsp;</td>
+  <td>{{#formtag:input|name="cals" type="button" value="SEARCH" id="mainchain"}}</td>
   </tr>
 </table>
-{{#formtag:input|name="cals" type="button" value="SEARCH" id="mainchain"}}
 }}
 {{#formtag:fieldset||
-{{#formtag:legend||Polysaccharide sequence (Advanced)}}
+{{#formtag:legend||Advanced keyword search}}
 {{#formtag:input|type="text" size="60" name="1" id="advanced_polysaccharide_sequence"}}
 {{#formtag:input|type="button" id="advanced_search_button" value="SEARCH"}}<br />
@@ Line 60: / Line 60: @@
 ==All Polysaccharide Sequences==
-{{#persist:ListMainchain|List mainchain|ListMainchain|0|dummy|;}}
+{{#persist:ListMainchain|List mainchains|ListMainchain|0|dummy|;}}

Category:LBS/Search: Difference between revisions

Revision as of 13:57, 30 November 2017

Search from Structure

All Polysaccharide Sequences

Search From Mass

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