Category:LBS/Search: Difference between revisions

Revision as of 00:50, 23 February 2018

{{#includejs:LBSSearch.js}} {{#includejs:CalculateMass.js|calculateF2M|calc_formula|calc_mass}} {{#includejs:GlycosphingolipidMassCalculator.js}} {{#includejs:AdvancedLBSSearch.js}}

Search from Structure

Search from Sphingolipid Major Series
Search from Specific Sugars

Search from the non-reducing end pattern (click "Show" to expand the table)

Name	Structure
1=Structure=GalNAca1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group A	GalNAc_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Gala1-3\(Fuca1-2\)Galb1-3GlcNAcb1-3\|Blood group B	Gal_α1-3(Fuc_α1-2)Gal_β1-3GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3GlcNAcb1-3\|Blood group H	Fuc_α1-2Gal_β1-3GlcNAc_β1-3-R
1=Structure=Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^a	Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-3\(Fuca1-4\)GlcNAcb1-3\|Lewis ^b	Fuc_α1-2Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-3\(Fuca1-4\)GlcNAcb1-3\|sialyl-Lewis^a	NeuAc_α2-3Gal_β1-3(Fuc_α1-4)GlcNAc_β1-3-R
1=Structure=Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^x, SSEA-1	Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=Fuca1-2Galb1-4\(Fuca1-3\)GlcNAcb1-3\|Lewis ^y	Fuc_α1-2Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=NeuAca2-3Galb1-4\(Fuca1-3\)GlcNAcb1-3\|sialyl-Lewis ^x	NeuAc_α2-3Gal_β1-4(Fuc_α1-3)GlcNAc_β1-3-R
1=Structure=GalNAca1-3GalNAcb1-3Gala1-4Galb1-4Glcb1\|Forssman antigen	GalNAc_α1-3GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R
1=Structure=GalNAcb1-3Gala1-4Galb1-4Glcb1\|P antigen	GalNAc_β1-3Gal_α1-4Gal_β1-4Glc_β1-R

Search from the polysaccharide sequence

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Non-reducing end

All Polysaccharide Sequences

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Search From Mass

Glycosphingolipid Mass Calculator for MS Analysis

Exact Mass	Nominal Mass	Formula

Carbohydrates

Hexose

HexNAc

NeuAc

NeuGc

Fucose

HexA

Fatty Acids

Carbon No.

Unsaturation

Hydroxy group

Polarity

Long Chain Bases

Carbon No.

Unsaturation

Hydroxy group

Adduct Ions

Na

K

Ammonium

Modification

Sulfate

Phosphate

Methyl

Acetyl

Lactone

Examples

Ganglioside GM1 of FA 18:0, LCB d20:1 (LBSG2005105)

Carbohydrates [3 Hexose, 1 HexNAc, 1 NeuAc]
Fatty acid [18 carbons, 0 unsaturation, 0 hydroxy group]
Long chain base [20 carbons, 1 unsaturation, 2 hydroxy groups]

Sulfatide of FA 24:1, LCB d18:1 (LBSG1001005)

Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
Long chain base [18 carbons, 1 unsaturation, 2 hydroxy groups]
Modification [Sulfate: 1]

Lactotetraosylceramide of FA 16:0, LCB t18:0 (LBSG3B04001)

Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]
Long chain base [18 carbons, 0 unsaturation, 3 hydroxy groups]

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@@ Line 179: / Line 179: @@
 </td></tr>
-<tr><td>'''Sulfatide of FA 24:1, LCB d18:1''' ([[LBSG100005]])
+<tr><td>'''Sulfatide of FA 24:1, LCB d18:1''' ([[LBSG1001005]])
 <ul><li>Carbohydrates [1 Hexose, 0 HexNAc, 0 NeuAc]
 <li>Fatty acid [24 carbons, 1 unsaturation, 0 hydroxy group]
@@ Line 187: / Line 187: @@
 </td></tr>
-<tr><td>'''Lactotetraosylceramide of FA 16:0, LCB t18:0''' ([[LBSG100005]])
+<tr><td>'''Lactotetraosylceramide of FA 16:0, LCB t18:0''' ([[LBSG3B04001]])
 <ul><li>Carbohydrates [3 Hexose, 1 HexNAc, 0 NeuAc]
 <li>Fatty acid [16 carbons, 0 unsaturation, 1 hydroxy group]

Category:LBS/Search: Difference between revisions

Revision as of 00:50, 23 February 2018

Search from Structure

All Polysaccharide Sequences

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