MediaWiki:LipoqualityChart.js
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// 定数 const DEFAULT_BAR_COLOR = "#7cb5ec"; const MARGIN = 30; var barColor = DEFAULT_BAR_COLOR; // バーチャート(バンドル)のX軸ラベル変更用 var legendOptions = ["Sample name","Sample source","Sample type","Tissue","Treatment","Extraction","LC type","MS type","Ion mode","Quantification"]; // グローバル変数 var gBarData; var chart; var piechart; var defaultTickInterval = currentTickInterval = 5; var gHeatmapData; var gChainData; // 初期化 /////////////////////////////////////////////////////////////////////////////////////////////////////////////// function lipoqulityChartInit() { // insert "Reset zoom" button var resetZoomButton = document.createElement("input"); resetZoomButton.setAttribute("type", "button"); resetZoomButton.value = "Reset zoom"; resetZoomButton.id = "resetZoomButton"; resetZoomButton.style.visibility = "hidden"; resetZoomButton.onclick = unzoomBarCharts; document.getElementById("resetZoom").appendChild(resetZoomButton); // ウィンドウサイズが変更されたら、チャートもリサイズする $(window).resize(function() { resizeChart(); }); } // ウィンドウサイズが変更されたとき、チャートの幅も修正する /////////////////////////////////////////////////////////////////////////////////////////////////////////////// function resizeChart() { if(chart == undefined || chart.length == 0) return; if(gChartType == "bar"){ // barchart & piechart var height = 300; var pieWidth = 400; if(document.getElementById("pieContainer").style.display == "none") pieWidth = 0; var width = $(window).width() - $("#sortableList").width() - $("#mw-panel").width() - pieWidth - MARGIN; if(width < 300) width = 300; for(var i = 0; i < chart.length; i ++) $("#container" + i).highcharts().setSize(width, height); for(var i = 0; i < piechart.length; i ++) $("#pieContainer" + i).highcharts().setSize(pieWidth, height); } else if(gChartType == "chain"){ // chain var height = 500; var width = $(window).width() - $("#sortableList").width()- $("#mw-panel").width() - MARGIN; $("#container0").highcharts().setSize(width, height); } else { // heatmap or barchart(bundle) var height = 400; var width = $(window).width() - $("#sortableList").width() - $("#mw-panel").width() - MARGIN; for(var i = 0; i < chart.length; i ++) $("#container" + i).highcharts().setSize(width, height); } } // 指定されたIDを持つDOMの全子ノードを削除する // param id - 対象ID function removeAllChild(id) { var dom = document.getElementById(id); for(var i = dom.childNodes.length-1; i >= 0; i --) dom.removeChild(dom.childNodes[i]); } // チャート表示 /////////////////////////////////////////////////////////////////////////////////////////////////////////////// // すべてのチャートの起点となる function showChart(targets) { if(targets.length == 0) return; document.getElementById("resetZoomButton").style.visibility = "hidden"; document.getElementById("showButton").disabled = true; document.getElementById("bar") .disabled = true; document.getElementById("heatmap") .disabled = true; document.getElementById("sortableList").style.display = "none"; // 以前の結果(ソートリスト、カットオフ、パイチャート等)を削除 removeAllChild("sortableList"); removeAllChild("rate"); removeAllChild("optionHeader"); removeAllChild("cutoff"); removeAllChild("pieContainer"); removeAllChild("container"); // 「取得中」を表示 document.getElementById('retrieving').style.display = "block"; if(document.getElementById('bar').checked) chartType = 'bar'; else if(document.getElementById('heatmap').checked) chartType = 'heatmap'; else chartType = "bar_bundle"; gChartType = chartType var result = retrieveChartData(targets, chartType); document.getElementById('retrieving').style.display = "none"; var root = document.getElementById('container'); root.textContent = ''; var cutoff = document.getElementById("cutoff"); var cutoffText = document.createElement("input"); cutoffText.id = "cutoffValue"; cutoffText.type = "text"; cutoffText.value = 0; // デフォルトは1%カット -> 初期表示は0%にしておく cutoffText.min = 0; cutoffText.max = 80; cutoffText.maxLength = 2; cutoffText.style.width = "4em"; cutoffText.style.textAlign = "right"; cutoff.appendChild(cutoffText); /* var unitLabel = document.createElement("span"); unitLabel.innerHTML = "%"; cutoff.appendChild(unitLabel); */ var cutoffButton = document.createElement("input"); cutoffButton.value = "% < cutoff"; cutoffButton.type = "button"; cutoff.appendChild(cutoffButton); //var result = JSON.parse(escape(jsonp)); if(gChartType == 'bar') showBarChart(result); else if(gChartType == 'heatmap'){ showHeatmap(result); }else showBarBundleChart(result); // 表示ボタン、チャートdom等を表示 document.getElementById("showButton").disabled = false; document.getElementById("bar") .disabled = false; document.getElementById("heatmap") .disabled = false; document.getElementById("sortableList").style.display = "block"; } // バーチャート(バンドル) ///////////////////////////////////////////////////////////////////////////////////////////////////// // JCBLの構造ページへ飛ぶ function jumpToStructureOnBundleBar(seq, x) { var chain = attrEscape(chart[0].xAxis[0].categories[x]); jumpToMassBank(gBarData[seq]["type"], chain, chart[0].adduct[seq][x]); //console.log(gBarData[seq]["type"] + " " + chain + " " + chart[0].adduct[seq][x]); } // データの切り替え(表示/非表示、0-intensity) /////////////////////////////////////////////////////////////////////////////////////////////////////////////// function setBarBundleData() { // inchiキー未処理 /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// var target = []; // カットオフ値を考慮 var cutoff = parseInt(document.getElementById("cutoffValue").value); for(var j = 0; j < chart[0].data[0].length; j ++){ var not0 = false; for(var i = 0; i < chart[0].series.length; i ++){ if(chart[0].data[i][j][1] >= cutoff){ not0 = true; break; } } target[j] = not0; } var adduct = []; for(var j = 0; j < chart[0].series.length; j ++){ var i = 0; var data = []; var xLabels = []; adduct[j] = []; for(var k = 0; k < chart[0].srcdata[j].length; k ++){ if(target[k]){ // チェックボックスにチェックがついていれば表示対象 // data[i] = [chart[j].xLabels[k], chart[j].data[k][1]]; if(document.getElementById("ratio").checked) // 相対値か絶対値か data[i] = [chart[0].xLabels[k], chart[0].srcdata[j][k] * 100 / chart[0].max]; else data[i] = [chart[0].xLabels[k], chart[0].srcdata[j][k]]; xLabels[i] = chart[0].xLabels[k]; adduct[j][i] = gBarData[j][k]; i ++; } } if(document.getElementById("ratio").checked){ // 相対値でのY軸タイトル // chart[0].yAxis[0].setExtremes(0, 100); chart[0].yAxis[0].update({max: 100}); chart[0].yAxis[0].axisTitle.attr({text: "Relative Intensity (%)"}); chart[0].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'}) } else { // 絶対値でのY軸タイトル // chart[0].yAxis[0].setExtremes(0, chart[0].max); chart[0].yAxis[0].update({max: chart.max}); chart[0].yAxis[0].axisTitle.attr({text: "Intensity (" + chart[0].quantification + ")"}); chart[0].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '</b>'}) } chart[0].xAxis[0].categories = xLabels; chart[0].series[j].setData(data, true); } chart[0].adduct = adduct; unzoomBarCharts(); } // 表示 /////////////////////////////////////////////////////////////////////////////////////////////////////////////// function showBarBundleChart(result) { // create "ignore 0-intensity" button document.getElementById("cutoffValue").onchange = function(){ setBarBundleData(); }; // create "sortable list" var sortableList = document.getElementById("sortableList"); for(var i = 0; i < result[0].map.length; i ++){ var line = document.createElement("div"); var cbox = document.createElement("input"); cbox.setAttribute("type", "checkbox"); cbox.setAttribute("checked", "yes"); cbox.setAttribute("seq", i); cbox.setAttribute("disabled", "yes"); cbox.id = "item" + i; cbox.onchange = function(e){ // 表示/非表示の切り替え /* var index = this.parentElement.parentElement.id.replace("sortableList", ""); var sortableList = document.getElementById("sortableList" + index); var sequence = []; for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){ if(sortableList.childNodes[i].childNodes[0].checked) sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq"); }*/ setBarBundleData(); }; line.appendChild(cbox); var label = document.createElement("label"); label.setAttribute("for", "item" + i); label.innerHTML = escape(result[0].map[i].title); line.appendChild(label); sortableList.appendChild(line); }/* $('#sortableList').sortable({ cursor: 'move', update: function(event, ui){ /* var index = ui.item[0].parentElement.id.replace("sortableList", ""); var sortableList = document.getElementById("sortableList" + index); var sequence = []; for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){ if(sortableList.childNodes[i].childNodes[0].checked) sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq"); }*//* setBarBundleData(); } });*/ // 凡例の切り替えを行うコンボボックス var changeLegend = document.getElementById("optionHeader"); var legendLabel = document.createElement("span"); legendLabel.innerHTML = "Legend"; changeLegend.appendChild(legendLabel); var selectLegend = document.createElement("select"); selectLegend.id = "selectLegend"; for(var i = 0; i < legendOptions.length; i ++){ var option = document.createElement('option'); option.setAttribute("value", legendOptions[i]); if(legendOptions[i] == "Treatment") option.setAttribute("selected", "true"); option.innerHTML = legendOptions[i]; selectLegend.appendChild(option); } selectLegend.onchange = function(e){ var index = document.getElementById("selectLegend").selectedIndex; for(var i = 0; i < chart[0].series.length; i ++){ chart[0].series[i].update({name:chart[0].meta[i][legendOptions[index]]}, false); } chart[0].redraw(false); } changeLegend.appendChild(selectLegend); // create barchart(s) gBarData = []; chart = []; piechart = []; seriesData = []; data = []; srcdata = []; var meta = []; var root = document.getElementById('container'); var unifiedFlag = true; var unitType = ''; // データの整理 for(var i = 0; i < result[0].map.length; i ++){ // 単位の統一がなされているかチェック if(i == 0) // 一番最初の単位を基準とする unitType = result[0].map[i].meta.Quantification; else if(unitType != result[0].map[i].meta.Quantification){ // 基準の単位と違う単位を発見 unitType = '???'; unifiedFlag = false; } gBarData[i] = []; data[i] = []; srcdata[i] = []; var xLabels = []; for(var j = 0; j < result[0].map[i].data.length; j ++){ // data[j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].map[i].max)]; data[i][j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].maxOfAll)]; // 相対値を計算 srcdata[i][j] = attrEscape(result[0].map[i].data[j][0]); // もともとの値を計算 xLabels[j] = attrEscape(result[0].x[j]); // X軸ラベル gBarData[i][j] = result[0].map[i].data[j].meta["Adduct"]; } // for link var type = result[0].map[i].title.replace(/.*\//,"").replace("[","_").replace("]", ""); var ionmode = ""; if(result[0].map[i].meta["Ion mode"] == "Positive") ionmode = "p"; else if(result[0].map[i].meta["Ion mode"] == "Negative") ionmode = "n"; gBarData[i]["type"] = type; gBarData[i]["ionmode"] = ionmode; console.log(gBarData[i]); meta[i] = result[0].map[i].meta; seriesData[i] = { name: attrEscape(result[0].map[i].meta["Treatment"]), data: data[i], events: { click: function(event) { //alert(event.point.name); var index = event.point.series.columnIndex; jumpToStructureOnBundleBar(index, event.point.x); } } } } // barchartの追加 var parent = document.createElement('div'); parent.id = 'container' + 0; parent.setAttribute("order", 0); root.appendChild(parent); chart[0] = new Highcharts.Chart({ chart: { type: 'column', zoomType: 'x', renderTo: parent }, title: { text: attrEscape(result[0].title) }, xAxis: { min: 0, type: 'category', labels: { rotation: -90, style: { fontSize: '11px', fontWeight: 'bold', fontFamily: 'Verdana, sans-serif' }, step: 1 } }, scrollbar: { enabled: true }, yAxis: { min: 0, max: 100, title: { text: 'Relative Intensity (%)' } }, legend: { enabled: true }, tooltip: { pointFormat: '<b>{point.y:.1f} %</b>', formatter: function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'} }, series: seriesData }); chart[0].xAxis[0].categories = xLabels; chart[0].data = data; chart[0].srcdata = srcdata; chart[0].max = result[0].maxOfAll; chart[0].xLabels = xLabels; chart[0].quantification = unitType; chart[0].meta = meta; chart[0].adduct = gBarData; // 絶対量/相対量を切り替えるチェックボックス var ratioCbox = document.createElement("input"); ratioCbox.setAttribute("type", "checkbox"); ratioCbox.setAttribute("checked", "no"); ratioCbox.id = "ratio"; ratioCbox.onchange = function(e){ setBarBundleData(); }; var label = document.createElement("label"); label.setAttribute("for", "ratio"); label.innerHTML = "ratio"; document.getElementById("rate").appendChild(ratioCbox); document.getElementById("rate").appendChild(label); resizeChart(); if(unifiedFlag == false) alert("intensityの単位が統一されていません。"); } // MassBankへ飛ぶ共通のメソッド function jumpToMassBank(lipidclass, chain, adduct) { var PRECURSOR_TYPE_NAMES = { '[M]+': 'p', '[M+H]+': 'Hp', '[M+Na]+': 'Nap', '[M+NH4]+': 'NH4p', '[M-H]-': 'Hm', '[M+FA-H]-': 'FAm', '[M+Hac-H]-': 'Hacm' }; var type = PRECURSOR_TYPE_NAMES[adduct]; window.open("http://133.242.136.63/wiki/Volatile:" + lipidclass + "?my_1=" + chain + "&my_2=" + type); // window.open("http://133.242.136.63/wiki/?lc=" + lipidclass + "&c=" + chain + "&p" + adduct, "new"); console.log(lipidclass +" " + chain +" " + adduct); } // バーチャート /////////////////////////////////////////////////////////////////////////////////////////////////////////////// // JCBLの構造ページへ飛ぶ function jumpToStructureOnBar(seq, x) { // window.open("http://jcbl.jp/wiki/LBG" + gBarData[seq][x], "new"); // window.open("http://133.242.136.63/wiki/Category:CS:" + gBarData[seq][x], "new"); // console.log(seq + "/" + x + " => " + gBarData[seq][x]); var chain = attrEscape(chart[0].xAxis[0].categories[x]); jumpToMassBank(gBarData[seq]["type"], chain, chart[seq].adduct[x]); //console.log(gBarData[seq]["type"] + " " + chain + " " + chart[seq].adduct[x]); /* if(chain.indexOf("/") >= 0) chain = "(" + chain + ")"; else chain = "_" + chain; var link = gBarData[seq]["type"] + chain + gBarData[seq]["ionmode"]; window.open("http://133.242.136.63/wiki/Category:CS:" + link, "new"); console.log(seq + "/" + x + " => " + link); */ } // 全バーチャートのズーム解除 /////////////////////////////////////////////////////////////////////////////////////////////////////////////// function unzoomBarCharts() { for(var i = 0; i < chart.length; i ++){ //chart[i].xAxis[0].options.tickInterval = defaultTickInterval; chart[i].xAxis[0].isDirty = true; chart[i].xAxis[0].setExtremes(null, null, animation=true); } document.getElementById("resetZoomButton").style.visibility = "hidden"; } // バーチャートデータの切り替え(表示/非表示、0-intensityで呼ばれる) ////////////////////////////////////////////////////////////////////////////////////////////////////// function setBarchartData() { // inchiキー未処理 /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// var target = []; var cutoff = parseInt(document.getElementById("cutoffValue").value); for(var j = 0; j < chart[0].data.length; j ++){ var not0 = false; for(var i = 0; i < chart.length; i ++){ if(chart[i].data[j][1] >= cutoff){ not0 = true; break; } } target[j] = not0; } for(var j = 0; j < chart.length; j ++){ var i = 0; var data = []; var xLabels = []; var adduct = []; for(var k = 0,l = 0; k < chart[j].data.length; k ++){ if(target[k]){ // data[i] = [chart[j].xLabels[k], chart[j].data[k][1]]; if(document.getElementById("ratio").checked) data[i] = [chart[j].xLabels[k], chart[j].srcdata[k] * 100 / chart[j].max]; else data[i] = [chart[j].xLabels[k], chart[j].srcdata[k]]; adduct[i] = gBarData[j].adduct[k]; xLabels[i++] = chart[j].xLabels[k]; } } if(document.getElementById("ratio").checked){ chart[j].yAxis[0].setExtremes(0, 100); chart[j].yAxis[0].axisTitle.attr({text: "Relative Intensity (%)"}); chart[j].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'}) } else { chart[j].yAxis[0].setExtremes(0, chart[j].max); chart[j].yAxis[0].axisTitle.attr({text: "Intensity (" + chart[j].quantification + ")"}); chart[j].tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '</b>'}) } chart[j].xAxis[0].categories = xLabels; chart[j].series[0].setData(data, true); chart[j].adduct = adduct; } unzoomBarCharts(); } // 表示 /////////////////////////////////////////////////////////////////////////////////////////////////////////////// function showBarChart(result) { function computeTickInterval(xMin, xMax) { var zoomRange = xMax - xMin; if(zoomRange <= 2) currentTickInterval = 0.5; if(zoomRange < 20) currentTickInterval = 1; else if(zoomRange < 100) currentTickInterval = 5; } // create ignore 0-intensity button document.getElementById("cutoffValue").onchange = function(){ setBarchartData(); }; // create sortable list var sortableList = document.getElementById("sortableList"); for(var i = 0; i < result[0].map.length; i ++){ var line = document.createElement("div"); var cbox = document.createElement("input"); cbox.setAttribute("type", "checkbox"); cbox.setAttribute("checked", "yes"); cbox.setAttribute("seq", i); cbox.id = "item" + i; cbox.onchange = function(e){ // 表示/非表示の切り替え var seq = this.getAttribute("seq"); var option; if(this.checked){ option = "block"; } else { option = "none"; } document.getElementById("container" + seq).style.display = option; document.getElementById("pieContainer" + seq).style.display = option; }; line.appendChild(cbox); var label = document.createElement("label"); label.setAttribute("for", "item" + i); //console.log(result); label.innerHTML = (i+1) + "." + escape(result[0].map[i].title); line.appendChild(label); sortableList.appendChild(line); } $('#sortableList').sortable({ cursor: 'move', update: function(event, ui){ var sortableList = document.getElementById("sortableList"); for(var i = 0; i < sortableList.childNodes.length; i ++){ var seq = sortableList.childNodes[i].childNodes[0].getAttribute("seq"); document.getElementById("container" + seq).setAttribute("order", i); document.getElementById("pieContainer" + seq).setAttribute("order", i); } $("#container").html( $("#container > div").sort(function(o1,o2) { var n1 = parseInt($(o1).attr("order"), 10); var n2 = parseInt($(o2).attr("order"), 10); if(n1 < n2) return -1; if(n1 > n2) return 1; return 0; }) ); $("#pieContainer").html( $("#pieContainer > div").sort(function(o1,o2) { var n1 = parseInt($(o1).attr("order"), 10); var n2 = parseInt($(o2).attr("order"), 10); if(n1 < n2) return -1; if(n1 > n2) return 1; return 0; }) ); } }); // パイチャートの表示/非表示の切り替え var switchPieHidden = document.getElementById("optionHeader"); var hiddenButton = document.createElement("input"); hiddenButton.setAttribute("type", "button"); hiddenButton.setAttribute("value", "hide piechart(s)"); hiddenButton.id = "switchPieHidden"; hiddenButton.onclick = function(e){ var pieContainer = document.getElementById("pieContainer"); if(pieContainer.style.display == "none"){ pieContainer.style.display = "block"; document.getElementById("switchPieHidden").setAttribute("value", "hide piechart(s)"); } else { pieContainer.style.display = "none"; document.getElementById("switchPieHidden").setAttribute("value", "show piechart(s)");; } resizeChart(); } switchPieHidden.appendChild(hiddenButton); // create barchart(s) gBarData = []; chart = []; piechart = []; var root = document.getElementById('container'); var pieRoot = document.getElementById('pieContainer'); for(var i = 0; i < result[0].map.length; i ++){ gBarData[i] = []; // データの整理 var data = []; var srcdata = []; var xLabels = []; gBarData[i].adduct = []; for(var j = 0; j < result[0].map[i].data.length; j ++){ // data[j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].map[i].max)]; data[j] = [attrEscape(result[0].x[j]), attrEscape(result[0].map[i].data[j][0] * 100 / result[0].map[i].max)]; srcdata[j] = attrEscape(result[0].map[i].data[j][0]); xLabels[j] = attrEscape(result[0].x[j]); gBarData[i].adduct[j] = result[0].map[i].data[j].meta["Adduct"]; // gBarData[i][j] = inchiEscape(result[0].map[i].data[j][2]); // InChIキー /* var type = result[0].map[i].title.replace(/.*\//,""); gBarData[i][j] = type + attrEscape(result[0].x[j]).replace("/","-"); // InChIキー*/ } // for link var type = result[0].map[i].title.replace(/.*\//,"").replace("[","_").replace("]", ""); var ionmode = ""; if(result[0].map[i].meta["Ion mode"] == "Positive") ionmode = "p"; else if(result[0].map[i].meta["Ion mode"] == "Negative") ionmode = "n"; gBarData[i]["type"] = type; gBarData[i]["ionmode"] = ionmode; // barchartの追加 var parent = document.createElement('div'); parent.id = 'container' + i; parent.setAttribute("order", i); root.appendChild(parent); chart[i] = new Highcharts.Chart({ chart: { type: 'column', zoomType: 'x', renderTo: parent, height: 250, resetZoomButton: { theme: { display: 'none' } } }, title: { text: (i+1) + '.' + attrEscape(result[0].map[i].title) }, xAxis: { min: 0, type: 'category', labels: { rotation: -90, style: { fontSize: '11px', fontWeight: 'bold', fontFamily: 'Verdana, sans-serif' }, step: 1 }, events : { afterSetExtremes: function(){ if(!this.chart.options.chart.isZoomed){ // 全バーチャートの拡大率を統一する if(this.chart.options.chart.isZoomed !== undefined) document.getElementById("resetZoomButton").style.visibility = "visible"; var xMin = this.chart.xAxis[0].min; var xMax = this.chart.xAxis[0].max; var zmRange = computeTickInterval(xMin, xMax); for(var i = 0; i < chart.length; i ++){ chart[i].xAxis[0].options.tickInterval = zmRange; chart[i].xAxis[0].isDirty = true; if(chart[i] !== this){ chart[i].options.chart.isZoomed = true; chart[i].xAxis[0].setExtremes(xMin, xMax, true); chart[i].options.chart.isZoomed = false; } } } }, } }, scrollbar: { enabled: true }, yAxis: { min: 0, max: 100, title: { text: 'Relative Intensity (%)' } }, legend: { enabled: false }, tooltip: { pointFormat: '<b>{point.y:.1f} %</b>', formatter: function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'} }, series: [{ name: 'Population', data: data, color: barColor, events: { click: function(event) { //alert(event.point.name); var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container",""); jumpToStructureOnBar(index, event.point.x); } } }] }); chart[i].xAxis[0].categories = xLabels; chart[i].data = data; chart[i].srcdata = srcdata; chart[i].max = result[0].map[i].max; chart[i].xLabels = xLabels; chart[i].quantification = result[0].map[i].meta.Quantification; chart[i].adduct = gBarData[i].adduct; // piechartの追加 var pieParent = document.createElement('div'); pieParent.id = 'pieContainer' + i; pieParent.setAttribute("order", i); pieRoot.appendChild(pieParent); piechart[i] = new Highcharts.Chart({ chart: { plotBackgroundColor: null, plotBorderWidth: null, plotShadow: false, type: 'pie', renderTo: pieParent, height: 250 }, title: { text: (i+1) + '.Intensity ratio' }, tooltip: { pointFormat: '{series.name}: <b>{point.percentage:.1f}%</b>' }, plotOptions: { pie: { allowPointSelect: true, cursor: 'pointer', dataLabels: { enabled: true, format: '<b>{point.name}</b>: {point.percentage:.1f} %', style: { color: (Highcharts.theme && Highcharts.theme.contrastTextColor) || 'black' } } } }, series: [{ name: 'Rate', colorByPoint: true, data: result[0].map[i].pie, events: { click: function(event) { // パイチャートをクリックしたら、別lipidlcassへ切り替える barColor = event.point.color; var nextType = event.point.name; var targets = []; var sortableList = document.getElementById("sortableList"); for(var i = 0; i < sortableList.childNodes.length; i ++){ var w = sortableList.childNodes[i].childNodes[1].innerHTML.replace(/^[0-9]+./,"").split("/"); targets.push(w[0] + "/" + w[1] + "/" + nextType); } showChart(targets); } } }] }); } // 絶対量/相対量を切り替えるチェックボックス var ratioCbox = document.createElement("input"); ratioCbox.setAttribute("type", "checkbox"); ratioCbox.setAttribute("checked", "no"); ratioCbox.id = "ratio"; ratioCbox.onchange = function(e){ setBarchartData(); }; var label = document.createElement("label"); label.setAttribute("for", "ratio"); label.innerHTML = "ratio"; document.getElementById("rate").appendChild(ratioCbox); document.getElementById("rate").appendChild(label); resizeChart(); } // ヒートマップ /////////////////////////////////////////////////////////////////////////////////////////////////////////////// // JCBLの構造ページへ飛ぶ function jumpToStructureOnHeatmap(seq, x, y) { // window.open("http://jcbl.jp/wiki/LBG" + gHeatmapData[seq].map[0].title.replace(/.*\//, "") + gHeatmapData[seq].x[x].replace("/","-"), "new"); // window.open("http://133.242.136.63/wiki/Category:CS:" + gBarData[seq][x], "new"); var type = gHeatmapData[0].map[0].title.replace(/.*\//,"").replace("[","_").replace("]", ""); var chain = attrEscape(chart[0].xAxis[0].categories[x]); var adduct = gBarData[y].adduct[x]; jumpToMassBank(type, chain, adduct); //console.log(type + " " + chain + " " + adduct); /* if(chain.indexOf("/") >= 0) chain = "(" + chain + ")"; else chain = "_" + chain; var link = type + chain + gBarData[y]; window.open("http://133.242.136.63/wiki/Category:CS:" + link, "new"); console.log(seq + "/" + y + "/" + x + " => " + link); */ // console.log(seq + "/" + y + "/" + x + " => " + gHeatmapData[seq].x[x]); } // ヒートマップデータの切り替え(表示/非表示、0-intensityで呼ばれる) //////////////////////////////////////////////////////////////////////////////////////////////////////// // param index - 何番目のデータか(おそらく0のみ) // param seq - 順番を格納した配列 // return なし function setHeatmapData(index, seq) { var i = 0; var length = gHeatmapData[index].map.length; // カットオフ値の考慮 var target = []; var cutoff = parseInt(document.getElementById("cutoffValue").value); var xLabels = []; for(var k = 0; k < chart[index].data[0].length; k ++){ var not0 = false; for(var j = 0; j < length; j ++){ if(chart[index].data[j][k] >= cutoff){ not0 = true; break; } } target[k] = not0; if(not0) xLabels[i++] = gHeatmapData[index].x[k]; } // ジャンプ先の設定 gBarData = []; for(var j = 0; j < seq.length; j ++){ var ionmode = ""; if(gHeatmapData[index].map[seq[j]].meta["Ion mode"] == "Positive") ionmode = "p"; else if(gHeatmapData[index].map[seq[j]].meta["Ion mode"] == "Negative") ionmode = "n"; gBarData[j] = ionmode; // LBG + lipid class + chain } gBarData.reverse(); var data = []; var yLabels = []; chart[index].inchi = []; i = 0; // 表示されている中での最大値を取得する var maxOfDisplayedAll = 0; for(var j = 0; j < seq.length && j < length; j ++){ if(maxOfDisplayedAll < gHeatmapData[index].map[seq[j]].max) maxOfDisplayedAll = gHeatmapData[index].map[seq[j]].max; } var max = 0; // データのセット for(var j = 0; j < seq.length && j < length; j ++){ gBarData[j] = []; gBarData[j].adduct = []; if(document.getElementById("eachInRate").checked) max = gHeatmapData[index].map[seq[j]].max; else max = maxOfDisplayedAll; // max = gHeatmapData[index].maxOfAll; // 常に全ての最大値を基準にする場合はこちらを使う chart[index].inchi[j] = []; for(var k = 0,l = 0; k < gHeatmapData[index].map[seq[j]].data.length; k ++){ if(target[k]){ data[i] = [l, seq.length-j-1, attrEscape(gHeatmapData[index].map[seq[j]].data[k][0] * 100 / max)]; // 相対値の計算 chart[index].inchi[j][k] = inchiEscape(gHeatmapData[index].map[seq[j]].data[k].meta["InChIKey"]); // インチ―キー gBarData[j].adduct[l++] = gHeatmapData[index].map[seq[j]].data[k].meta["Adduct"]; i ++; } } yLabels[j] = (parseInt(seq[j])+1) + "." + attrEscape(gHeatmapData[index].map[seq[j]].title.replace(/\/[^\/]+$/, "")); // Y軸ラベル } gBarData.reverse(); yLabels.reverse(); chart[index].zoomOut(); chart[index].series[0].setData(data, true, true, false); chart[index].yAxis[0].setCategories(yLabels); chart[index].xAxis[0].setCategories(xLabels); // バグ対策用 - なぜか、データを再セットすると拡大されるため chart[index].xAxis[0].isDirty = true; chart[index].xAxis[0].setExtremes(null, null,animation=true); chart[index].yAxis[0].isDirty = true; chart[index].yAxis[0].setExtremes(null, null,animation=true); } // ヒートマップのデータを再設定する //////////////////////////////////////////////////////////////////////// // param index - ソートリストのインデックス(おそらく0のみ) // return なし function resetHeatmapData(index) { var sortableList = document.getElementById("sortableList" + index); var sequence = []; for(var i = 0, j = 0; i < sortableList.childNodes.length; i ++){ if(sortableList.childNodes[i].childNodes[0].checked) sequence[j++] = sortableList.childNodes[i].childNodes[0].getAttribute("seq"); } setHeatmapData(index, sequence); } // ヒートマップ作成 ///////////////////////////////////////////////////////////////////////////////////////// // param result チャートデータ // return なし function showHeatmap(result) { gBarData = []; gHeatmapData = []; var root = document.getElementById('container'); var sortableList = document.getElementById("sortableList"); chart = []; gHeatmapData = result; for(var i = 0; i < result.length; i ++){ var title = attrEscape(result[i].title); // 親要素 var parent = document.createElement('div'); parent.id = 'container' + i; root.appendChild(parent); var index = 0; var data = []; var yLabels = []; var length = result[i].map.length var inchi = []; var ratioData = []; // データの整理 for(var j = 0; j < length; j ++){ inchi[j] = []; ratioData[j] = []; gBarData[j] = {}; gBarData[j].adduct = []; for(var k = 0; k < result[i].map[j].data.length; k ++){ data[index] = [k, length-j-1, attrEscape(result[i].map[j].data[k][0] * 100 / result[i].map[j].max)]; // 相対値の計算 // data[index] = [k, length-j-1, attrEscape(result[i].map[j].data[k][0] * 100 / result[i].maxOfAll)]; inchi[j][k] = inchiEscape(result[i].map[j].data[k].meta["InChIKey"]); // インチ-キーの格納 ratioData[j][k] = data[index][2]; // cutoff用%値 gBarData[j].adduct[k] = result[i].map[j].data[k].meta["Adduct"]; index ++; } /* var ionmode = ""; if(result[i].map[j].meta["Ion mode"] == "Positive") ionmode = "p"; else if(result[i].map[j].meta["Ion mode"] == "Negative") ionmode = "n"; gBarData[j] = ionmode; // LBG + lipid class + chain */ yLabels[j] = (j+1) + "." + attrEscape(result[i].map[j].title.replace(/\/[^\/]+$/, "")); // Y軸ラベル } console.log(gBarData); gBarData.reverse(); console.log(gBarData); yLabels.reverse(); // highchartsの性質上、Y軸ラベルを反転させる for(var j = 0; j < result[i].x.length; j ++) result[i].x[j] = attrEscape(result[i].x[j]); // X軸ラベル // create "ignore 0-intensity button" document.getElementById("cutoffValue").onchange = function(){ // 表示/非表示の切り替え // 下と同じなので、後でまとめる for(var index = 0; index < chart.length; index ++){ resetHeatmapData(index); } }; // create "sortable list" var listDiv = document.createElement("div"); listDiv.id = "sortableList" + i; for(var j = 0; j < result[i].map.length; j ++){ var line = document.createElement("div"); var cbox = document.createElement("input"); cbox.setAttribute("type", "checkbox"); cbox.setAttribute("checked", "yes"); cbox.setAttribute("seq", j); cbox.id = "item" + j; cbox.onchange = function(e){ // 表示/非表示の切り替え var index = this.parentElement.parentElement.id.replace("sortableList", ""); resetHeatmapData(index); }; line.appendChild(cbox); var label = document.createElement("label"); label.setAttribute("for", "item" + j); label.innerHTML = (j+1) + "." + escape(result[i].map[j].title); line.appendChild(label); listDiv.appendChild(line); } sortableList.appendChild(listDiv); $('#sortableList' + i).sortable({ cursor: 'move', update: function(event, ui){ var index = ui.item[0].parentElement.id.replace("sortableList", ""); resetHeatmapData(index); } }); $('#sortableList').sortable(false); // それぞれのレート/全体でのレート var rateCbox = document.createElement("input"); rateCbox.setAttribute("type", "checkbox"); rateCbox.setAttribute("checked", "yes"); rateCbox.id = "eachInRate"; rateCbox.onchange = function(e){ // rateの切り替え resetHeatmapData(0); // 一つであると仮定するので、複数ある場合は修正が必要なことに注意 }; var label = document.createElement("label"); label.setAttribute("for", "eachInRate"); label.innerHTML = "ratio"; document.getElementById("rate").appendChild(rateCbox); document.getElementById("rate").appendChild(label); // ヒートマップ作成 chart[i] = new Highcharts.Chart({ chart: { type: 'heatmap', zoomType: 'xy', animation: 1, marginBottom: 0, plotBorderWidth: 0, renderTo: parent, animation: true, }, scrollbar: { enabled: true }, title: { text: title, align: 'left' }, xAxis: { categories: result[i].x, opposite: true, labels: { rotation: -90, style: { fontSize: '11px', fontWeight: 'bold', fontFamily: 'Verdana, sans-serif' }, step: 1 }, }, yAxis: { categories: yLabels, title: null, labels: { step: 1 } }, colorAxis: { min: 0, max: 100, minColor: '#ffffff', maxColor: Highcharts.getOptions().colors[8] }, legend: { align: 'right', layout: 'vertical', margin: 0, verticalAlign: 'top', y: 100, symbolHeight: 145 }, tooltip: { formatter: function () { return this.series.yAxis.categories[this.point.y] + '<br />' + this.series.xAxis.categories[this.point.x] + '<br />' + (Math.round(this.point.value*10)/10) + ' %'; } }, series: [{ name: 'HEK', borderWidth: 1, data: data, dataLabels: { enabled: false, color: '#000000' }, point: { events: { click: function(event){ // var index = event.target.farthestViewportElement.parentNode.parentElement.id.replace("container",""); jumpToStructureOnHeatmap(0, event.point.x, event.point.y); // jumpToJcbl(event.point.series.chart.inchi[event.point.y][event.point.x]); } } } }] }); chart[i].inchi = inchi; chart[i].data = ratioData; //chart.setSize(600,300,false); } resizeChart(); } // chainチャート //////////////////////////////////////////////////////////////////// // データの切り替え(表示/非表示、0-intensity) /////////////////////////////////////////////////////////////////////////////////////////////////////////////// function setChainData() { // inchiキー未処理 /////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// var target = []; // カットオフ値を考慮 var cutoff = parseInt(document.getElementById("cutoffValue").value); for(var j = 0; j < chart.data.length; j ++){ target[j] = chart.data[j]['y'] >= cutoff; } var i = 0; var data = []; var xLabels = []; adduct = []; // gBarData.ionmode = []; for(var k = 0; k < chart.srcdata.length; k ++){ if(target[k]){ // チェックボックスにチェックがついていれば表示対象 // data[i] = [chart[j].xLabels[k], chart[j].data[k][1]]; if(document.getElementById("ratio").checked) // 相対値か絶対値か data[i] = {y:chart.srcdata[k] * 100 / chart.max, color:chart.colors[k%chart.colors.length]}; else data[i] = {y:chart.srcdata[k], color:chart.colors[k%chart.colors.length]}; xLabels[i] = chart.xLabels[k]; /* var ionmode = ""; if(gChainData.ionmode[k] == "Positive") ionmode = "p"; else if(gChainData.ionmode[k] == "Negative") ionmode = "n"; gBarData.ionmode[i++] = ionmode; */ adduct[i++] = gBarData.adduct[k]; } } if(document.getElementById("ratio").checked){ // 相対値でのY軸タイトル // chart.yAxis[0].setExtremes(0, 100); chart.yAxis[0].update({max: 100}); chart.yAxis[0].axisTitle.attr({text: "Relative Intensity (%)"}); chart.tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'}) } else { // 絶対値でのY軸タイトル // chart.yAxis[0].setExtremes(0, chart.max); chart.yAxis[0].update({max: chart.max}); chart.yAxis[0].axisTitle.attr({text: "Intensity (" + chart.quantification + ")"}); chart.tooltip.options.formatter = (function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '</b>'}) } chart.xAxis[0].categories = xLabels; chart.series[0].setData(data, true); chart.adduct = adduct; chart.xAxis[0].isDirty = true; chart.xAxis[0].setExtremes(null, null, animation=true); } // param result 対象データ // return なし function showChainChart(result) { var colors = ['#ff7f7f','#7f7fff','#7fff7f','#ff7fbf','#bfff7f','#ff7fff','#7fffff','#000000','#bf7fff','#7fffbf','#ffbf7f','#808080']; gChainData = result; gChartType = "chain"; // cutoffボックス。冗長的なので、整理したい var cutoff = document.getElementById("cutoff"); var cutoffText = document.createElement("input"); cutoffText.id = "cutoffValue"; cutoffText.type = "text"; cutoffText.value = 0; // デフォルトは1%カット cutoffText.min = 0; cutoffText.max = 80; cutoffText.maxLength = 2; cutoffText.style.width = "4em"; cutoffText.style.textAlign = "right"; cutoffText.onchange = function(){ setChainData(); }; cutoff.appendChild(cutoffText); var cutoffButton = document.createElement("input"); cutoffButton.value = "% < cutoff"; cutoffButton.type = "button"; cutoff.appendChild(cutoffButton); // create "sortable list" var sortableList = document.getElementById("sortableList"); sortableList.style.display = "block"; for(var i = 0; i < result.x.length; i ++){ var line = document.createElement("div"); var cbox = document.createElement("input"); cbox.setAttribute("type", "checkbox"); cbox.setAttribute("checked", "yes"); cbox.setAttribute("seq", i); cbox.setAttribute("disabled", "yes"); cbox.id = "item" + i; line.appendChild(cbox); var label = document.createElement("label"); label.setAttribute("for", "item" + i); label.innerHTML = escape(result.x[i]); line.appendChild(label); sortableList.appendChild(line); } // create barchart(s) // gBarData = []; var root = document.getElementById('container'); // データの整理 gBarData = []; gBarData.lipidclass = result.lipidclass;//.replace("[","_").replace("](","(").replace(/:/g,"_"); gBarData.chain = result.chain; gBarData.adduct = []; var data = []; var srcdata = []; var xLabels = []; for(var j = 0; j < result.intensity.length; j ++){ // data[j] = [attrEscape(result.x[j]), attrEscape(result.intensity[j] * 100 / result.maxOfAll)]; // 相対値の計算 data[j] = {y:attrEscape(result.intensity[j] * 100 / result.maxOfAll), color:colors[j%colors.length]}; // 相対値の計算 srcdata[j] = attrEscape(result.intensity[j]); xLabels[j] = attrEscape(result.x[j]); gBarData.adduct[j] = result.adduct[j]; /* var ionmode = ""; if(result.ionmode[j] == "Positive") ionmode = "p"; else if(result.ionmode[j] == "Negative") ionmode = "n"; gBarData.ionmode[j] = ionmode;*/ // var type = result[0].map[i].title.replace(/.*\//,""); // gBarData[i][j] = type + attrEscape(result[0].x[j]).replace("/","-"); // InChIキー } // barchartの追加 var parent = document.createElement('div'); parent.id = 'container0'; root.appendChild(parent); chart = new Highcharts.Chart({ chart: { type: 'column', zoomType: 'x', renderTo: parent, height: 500 }, title: { text: attrEscape(result.title) }, xAxis: { min: 0, type: 'category', categories:result.x, labels: { rotation: -90, style: { fontSize: '15px', fontWeight: 'bold', fontFamily: 'Verdana, sans-serif' }, step: 1 } }, scrollbar: { enabled: true }, yAxis: { min: 0, max: 100, title: { text: 'Relative Intensity (%)' } }, legend: { enabled: false }, tooltip: { pointFormat: '<b>{point.y:.1f} %</b>', formatter: function(){return this.x + '<br/ ><b>' + this.y.toFixed(1) + '%</b>'} }, plotOptions: { column: { pointRange: 2 } }, series: [{ name: 'Population', data: data, events: { click: function(event) { jumpToStructureOnChain(event.point.x); } } }] }); // chart.xAxis[0].categories = result.x; chart.data = data; chart.srcdata = srcdata; chart.max = result.maxOfAll; chart.xLabels = xLabels; chart.quantification = result.quantification; chart.colors = colors; chart.adduct = gBarData.adduct; // 絶対量か相対量か var ratioCbox = document.createElement("input"); ratioCbox.setAttribute("type", "checkbox"); ratioCbox.setAttribute("checked", "no"); ratioCbox.id = "ratio"; ratioCbox.onchange = function(e){ setChainData(); }; var label = document.createElement("label"); label.setAttribute("for", "ratio"); label.innerHTML = "ratio"; document.getElementById("rate").appendChild(ratioCbox); document.getElementById("rate").appendChild(label); resizeChart(); if(result.quantification == "?") alert("intensityの単位が統一されていません。"); } function jumpToStructureOnChain(x) {/* var link = gBarData.title + gBarData.ionmode[x]; window.open("http://133.242.136.63/wiki/Category:CS:" + link, "new"); console.log(x + " => " + link); */ jumpToMassBank(gBarData.lipidclass, gBarData.chain, chart.adduct[x]); //console.log(gBarData.lipidclass + " " + gBarData.chain + " " + chart.adduct[x]); } // ※未使用※ /////////////////////////////////////////////////////////////////////////////////////////////////////////////// function getTarget(children, target) { for(var i = 0; i < children.length; i ++){ if(target == children[i].childNodes[0].textContent){ return $(children[i]); } // console.log(children[i].childNodes[0].textContent); } return null; }