Category:LBG: Difference between revisions

No edit summary
 
(123 intermediate revisions by 2 users not shown)
Line 1: Line 1:
{{Huge|Glycerolipid (グリセロ脂質)}}
{{Huge|{{Bilingual|グリセロ脂質|Glycerolipid}} }}
{{LB/Header}}
{{Hierarchy|{{PAGENAME}}}}
{{Hierarchy|{{PAGENAME}}}}
 
{| style="float:right"
|__TOC__
|}
==Class Overview==
==Class Overview==


{{Twocolumn|
{{Twocolumn|
(英文説明・仮) Complex lipid is the main structural component of biological membrane, is a form of lipid bilayer, and broadly classified into Glycerolipid and Sphingolipid. The Glycerolipid category (LBG) includes Glycerophospholipid and Glyceroglycolipid.
Complex lipid is the major structural component of biological membranes (lipid bilayer), and is broadly classified into glycerolipid containing glycerol and sphingolipid containing sphingoid. The glycerolipid category (LBG) includes glycoglycerolipid and phosphoglycerolipid.
|
|
(和文説明・仮)
リン酸や糖などを含む脂質は複合脂質と呼ばれ、細胞膜の脂質二重層の主要な構成要素です。複合脂質は、一般的にグリセロールを含む脂質 (グリセロ脂質) とスフィンゴイドを含む脂質 (スフィンゴ脂質) に大別されます。グリセロ脂質 (LBG) には、グリセロ糖脂質 (glycoglycerolipid) とグリセロリン脂質 (glycerophospholipid) が含まれます。
リン酸や糖などを含む脂質は複合脂質と呼ばれ、これは細胞膜の脂質二重層の主要な構成要素です。
複合脂質は、一般的にグリセロールを含む脂質(グリセロ脂質)とスフィンゴイドを含む脂質(スフィンゴ脂質)に大別されます。
<br>グリセロ脂質カテゴリー(LBG)には、グリセロリン脂質 (Glycerophospholipid) 、グリセロ糖脂質 (Glyceroglycolipid) などの、グリセロール骨格を共通構造とする分子が含まれています。
}}
}}


===Common Abbreviations <small>よく使う略称</small>===
={{Bilingual|略称の記載法|Common Nomenclature}}=
{|
|-
| PE || Phosphatidylethanolamine || ホスファチジルエタノールアミン
|-
| PC || PhosphatidylCholine || ホスファチジルコリン
|-
| PS || Phosphatidylserine || ホスファチジルセリン
|-
| PI || Phosphatidylinositol || ホスファチジルイノシトール
|}
 
==Design of Glycerolipid identifiers <small>ID番号の設計</small>==
<center>
12-DIGIT
<table border=1>
<tr>
<td style="background-color:yellowgreen;" width=15px align="center"><big>L</big>
<td style="background-color:yellowgreen;" width=15px align="center"><big>B</big>
<td style="background-color:darkseagreen;" width=15px align="center"><big>G</big>
<td style="background-color:tomato; color:white" width=15px align="center"><big>''x''</big>
<td style="background-color:tomato; color:white" width=15px align="center"><big>''x''</big>
<td style="background-color:purple; color:white" width=15px align="center"><big>''y''</big>
<td style="background-color:firebrick; color:white" width=15px align="center"><big>''z''</big>
<td style="background-color:firebrick; color:white" width=15px align="center"><big>''z''</big>
<td style="background-color:green; color:white" width=15px align="center"><big>''w''</big>
<td style="background-color:green; color:white" width=15px align="center"><big>''w''</big>
<td style="background-color:white;" width=15px align="center"><big>''c''</big>
<td style="background-color:white;" width=15px align="center"><big>''c''</big>
<td style="background-color:gray;" width=15px align="center"><big>'':''</big>
<td style="background-color:yellowgreen;" width=15px align="center"><big>L</big>
<td style="background-color:yellowgreen;" width=15px align="center"><big>B</big>
<td style="background-color:darkseagreen;" width=15px align="center"><big>G</big>
<td style="background-color:tomato; color:white" width=15px align="center"><big>''x''</big>
<td style="background-color:tomato; color:white" width=15px align="center"><big>''x''</big>
<td style="background-color:purple; color:white" width=15px align="center"><big>''y''</big>
<td style="background-color:firebrick; color:white" width=15px align="center"><big>''z''</big>
<td style="background-color:firebrick; color:white" width=15px align="center"><big>''z''</big>
<td style="background-color:green; color:white" width=15px align="center"><big>''w''</big>
<td style="background-color:green; color:white" width=15px align="center"><big>''w''</big>
<td style="background-color:white;" width=15px align="center"><big>''c''</big>
<td style="background-color:white;" width=15px align="center"><big>''c''</big>
</tr>
</table>
</center>
{{Twocolumn|
{{Twocolumn|
* ''x'' ... carbon chain length
[https://lipidmaps.org LipidMaps Consortium] in the US defines the standard way of structure description (nomenclature). Please follow this standard especially when exact structure is not determined due to experimental procedures.
* ''y'' ... degree of unsaturation
* ''z'' ... position of n-''z'' (n minus z; also ω-z or omega-z) nomenclature
* ''w'' ... number of attached sugars (inositol is counted too)
* ''c'' ... serial number
|
|
* ''x'' ... 炭素鎖長
米国の[https://lipidmaps.org LipidMaps コンソーシアム]では、構造の標準的な表記法を定めています(命名系)。とりわけ分析法により構造に曖昧な部分が残る場合は、以下の表記法を踏襲してください。
* ''y'' ... 不飽和度
* ''z'' ... n-''z'' (またはω-zやomega-z) における数
* ''w'' ... 修飾する糖の個数 (イノシトールも入れる)
* ''c'' ... 通し番号
}}
}}
Reference: "Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures" [https://www.jlr.org/article/S0022-2275(20)60017-7/fulltext <i>J Lipid Res</i> 61(12), 1539-1555, 2020]


==GlyceroLipid==


==Classification by Chain Length <small>鎖長による分類</small>==
{{Twocolumn|
{{Twocolumn|
Fatty acids are extended by polymerization of malonyl CoA, and have even chain length in general.
Glycerolipid is referred to as mono-, di-, and triglycerides depending on the number of acyl chains (fatty acids). When sugars are attached, the modification comes before the backbone name; SQ, MG, and DG indicate Sulfoquinovose, single hexose, and double hexoses, respectively.Hexose is commonly galactose, and MG and DG may refer to mono- and digalactose.
|
|
脂肪酸はマロニルCoAの重合によって伸張し、通常は炭素数が偶数です。長いものほど融点が高くなります。
配位するアシル基(脂肪酸)の数により、モノ・ジ・トリアシルグリセロール(それぞれ MG, DG, TG)と呼ばれます。グリセロール骨格に糖鎖が付く場合は MG や DG の前に SQ (Sulfoquinovosyl)、MG (Monoglycosyl)、DG (Diglycosyl) をつけます。MGやDGの略称はガラクトースの意味で使われる場合もあります。
 
}}
}}


<center>
{| class="wikitable" cellpadding="4"
{| class="wikitable" border="1" cellpadding="2" cellspacing="1" margin: 1em 1em 1em 1em"
|-
|+ Table 1. Classification by Chain Length [[Image:LBF.png|120px]]
!  ||  || Monoglycosyl (単糖) || Diglycosyl (二糖) || Sulfoquinovosyl (スルホキノボース)
|- valign="top"
|-
|align="center"|Chain length =<7<br>[[:Category:BM|BMFY: Short-chain]]<br>短鎖<br><br><br>N.A.
| MG : || Monoacylglycerol <br/>(モノアシルグリセロール) || MGMG || DGMG || SQMG
|align="center"|Chain length =8<br>[[Volatile:ListMol|LBF08|LBF08: Octanoid]]<br>オクタノイド <br>[[Image:LBF08.png|85px]]{{LBF digit910Table|08}}
|-
|align="center"|Chain length =9<br>[[Volatile:ListMol|LBF09|LBF09: Nonanoid]]<br>ノナノイド <br>[[Image:LBF09.png|85px]]{{LBF digit910Table|09}}
| DG : || Diacylglycerol <br/>(ジアシルグリセロール) || MGDG || DGDG || SQDG
|align="center"|Chain length =10<br>[[Volatile:ListMol|LBF10|LBF10: Decanoid]]<br>デカノイド <br>[[Image:LBF10.png|85px]]{{LBF digit910Table|10}}
|-
| TG : || Triacylglycerol <br/>(トリアシルグリセロール)
|colspan="3" align="center"| n.a. (該当なし)
|}


|- valign="top"
==Glycerophospholipid==
|align="center"|Chain length =11<br>[[Volatile:ListMol|LBF11|LBF11: Undecanoid]]<br>アンデカノイド <br>[[Image:LBF11.png|85px]]{{LBF digit910Table|11}}
{{Twocolmn|
|align="center"|Chain length =12<br>[[Volatile:ListMol|LBF12|LBF12: Dodecanoid]]<br>ドデカノイド <br>[[Image:LBF12.png|85px]]{{LBF digit910Table|12}}
|align="center"|Chain length =13<br>[[Volatile:ListMol|LBF13|LBF13: Tridecanoid]]<br>トリデカノイド <br>[[Image:LBF13.png|85px]]{{LBF digit910Table|13}}
|align="center"|Chain length =14<br>[[Volatile:ListMol|LBF14|LBF14: Tetradecanoid]]<br>テトラデカノイド <br>[[Image:LBF14.png|85px]]{{LBF digit910Table|14}}


|- valign="top"
|
|align="center"|Chain length =15<br>[[Volatile:ListMol|LBF15|LBF15: Pentadecanoid]]<br>ペンタデカノイド <br>[[Image:LBF15.png|85px]]{{LBF digit910Table|15}}
グリセロリン脂質は生体膜の主要成分であり、グリセロールに2つの脂肪酸とリン酸を含む極性基が結合しています。
|align="center"|Chain length =16<br>[[Volatile:ListMol|LBF16|LBF16: Hexadecanoid]]<br>ヘキサデカノイド <br>[[Image:LBF16.png|85px]]{{LBF digit910Table|16}}
|align="center"|Chain length =17<br>[[Volatile:ListMol|LBF17|LBF17: Heptadecanoid]]<br>ヘプタデカノイド <br>[[Image:LBF17.png|85px]]{{LBF digit910Table|17}}
|align="center"|Chain length =18<br>[[Volatile:ListMol|LBF18|LBF18: Octadecanoid]]<br>オクタデカノイド <br>[[Image:LBF18.png|85px]]{{LBF digit910Table|18}}


|- valign="top"
}}
|align="center"|Chain length =19<br>[[Volatile:ListMol|LBF19|LBF19: Nonadecanoid]]<br>ノナデカノイド <br>[[Image:LBF19.png|85px]]{{LBF digit910Table|19}}
{| class="wikitable"
|align="center"|Chain length =20<br>[[Volatile:ListMol|LBF20|LBF20: Eicosanoid]]<br>エイコサノイド <br>[[Image:LBF20.png|85px]]{{LBF digit910Table|20}}
|-
|align="center"|Chain length =21<br>[[Volatile:ListMol|LBF21|LBF21: Uncosanoid]]<br>アンコサノイド <br>[[Image:LBF21.png|85px]]{{LBF digit910Table|21}}
| Phosphatidic acid<br/>ホスファチジン酸 || PA, Ptd
|align="center"|Chain length =22<br>[[Volatile:ListMol|LBF22|LBF22: Docosanoid]]<br>ドコサノイド <br>[[Image:LBF22.png|85px]]{{LBF digit910Table|22}}
|-
| Phosphatidylcholine<br/>ホスファチジルコリン ||  PC, PtdCho
|-
| Phosphatidylethanolamine<br/>ホスファチジルエタノールアミン || PE, PtdEtn
|-
| Phosphatidylserine<br/>ホスファチジルセリン || PS, PtdSer
|-
| Phosphatidylinositol<br/>ホスファチジルイノシトール ||  PI, PtdIns
|-
| Phosphatidylinositol-mannoside<br/>ホスファチジルイノシトールマンノシド || PIM
|-
| Phosphatidylglycerol<br/>ホスファチジルグリセロール || PG, PtdGro
|-
| Phosphatidylglycerolphosphate<br/>ホスファチジルグリセロールリン酸 || PGP
|-
| Cardiolipin<br/>カルジオリピン || CL, Ptd2Gro
|-
| Bis[monoacylglycero]phosphates<br/>ビス(モノアシルグリセロ)リン酸 || BMP
|}


|- valign="top"
|align="center"|Chain length =23<br>[[Volatile:ListMol|LBF23|LBF23: Tricosaoid]]<br>トリコサノイド <br>[[Image:LBF23.png|85px]]{{LBF digit910Table|23}}
|align="center"|Chain length =24<br>[[Volatile:ListMol|LBF24|LBF24: Tetracosanoid]]<br>テトラコサノイド <br>[[Image:LB24.png|85px]]{{LBF digit910Table|24}}
|align="center"|Chain length =25<br>[[Volatile:ListMol|LBF25|LBF25: Pentacosanoid]]<br>ペンタコサノイド <br>[[Image:LBF25.png|85px]]{{LBF digit910Table|25}}
|align="center"|Chain length =26<br>[[Volatile:ListMol|LBF26|LBF26: Hexacosanoid]]<br>ヘキサコサノイド <br>[[Image:LBF26.png|85px]]{{LBF digit910Table|26}}


|- valign="top"
<!----
|align="center"|Chain length =27<br>[[Volatile:ListMol|LBF27|LBF27: Heptacosanoid]]<br>ヘプタコサノイド <br>[[Image:LBF27.png|85px]]{{LBF digit910Table|27}}
=={{Bilingual|分類|Classification}}==
|align="center"|Chain length =28<br>[[Volatile:ListMol|LBF28|LBF28: Octacosanoid]]<br>オクタコサノイド <br>[[Image:LBF28.png|85px]]{{LBF digit910Table|28}}
==={{Bilingual|糖の個数もしくは極性基|By the Number of Sugars or the Head Group}}===
|align="center"|Chain length =29<br>[[Volatile:ListMol|LBF29|LBF29: Nonacosanoid]]<br>ノナコサノイド <br>[[Image:LBF29.png|85px]]{{LBF digit910Table|29}}
|align="center"|Chain length =30<br>[[Volatile:ListMol|LBF30|LBF30: Triacontanoid]]<br>トリアコンタノイド <br>[[Image:LBF30.png|85px]]{{LBF digit910Table|30}}
 
|- valign="top"
|align="center"|Chain length =31<br>[[Volatile:ListMol|LBF31|LBF31: Hentriacontanoid]]<br>ヘントリアコンタノイド <br>[[Image:LBF31.png|85px]]{{LBF digit910Table|31}}
|align="center"|Chain length =32<br>[[Volatile:ListMol|LBF32|LBF32: Dotriacontanoid]]<br>ドトリアコンタノイド <br>[[Image:LBF32.png|85px]]{{LBF digit910Table|32}}
|align="center"|Chain length =33<br>[[Volatile:ListMol|LBF33|LBF33: Tritriacontanoid]]<br>トリトリアコンタノイド <br>[[Image:LBF33.png|85px]]{{LBF digit910Table|33}}
|align="center"|Chain length =34<br>[[Volatile:ListMol|LBF34|LBF34: Tetratriacontanoid]]<br>テトラトリアコンタノイド <br>[[Image:LBF34.png|85px]]{{LBF digit910Table|34}}
 
|- valign="top"
|align="center"|Chain length =35<br>[[Volatile:ListMol|LBF35|LBF35: Pentatriacontanoid]]<br>ペンタトリアコンタノイド <br>[[Image:LBF35.png|85px]]{{LBF digit910Table|35}}
|align="center"|Chain length =36<br>[[Volatile:ListMol|LBF36|LBF36: Hexatriacontanoid]]<br>ヘキサトリアコンタノイド <br>[[Image:LBF36.png|85px]]{{LBF digit910Table|36}}
|align="center"|Chain length =37<br>[[Volatile:ListMol|LBF37|LBF37: Heptatriacontanoid]]<br>ヘプタトリアコンタノイド <br>[[Image:LBF37.png|85px]]{{LBF digit910Table|37}}
|align="center"|Chain length =38<br>[[Volatile:ListMol|LBF38|LBF38: Octatriacontanoid]]<br>オクタトリアコンタノイド <br>[[Image:LBF38.png|85px]]{{LBF digit910Table|38}}
 
|- valign="top"
|align="center"|Chain length =46<br>[[Volatile:ListMol|LBF46|LBF46: HexaTetracontanoid]]<br>ヘキサテトラコンタノイド <br>[[Image:LBF46.png|85px]]{{LBF digit910Table|46}}
|align="center"|
|align="center"|
|align="center"|
|}
</center>




==Classification by degree of unsaturation <small>不飽和度による分類</small>==
{{Twocolumn|
{{Twocolumn|
 
For glycoglycerolipid, 2 digits indicate the number of sugars. For  phosphoglycerolipid, common abbreviations such as PS (phosphatidylserine)or PE (phosphatidylethanolamine).
|
|
 
グリセロ糖脂質は結合している糖の総数を、グリセロリン脂質の場合はPS(ホスファチジルセリン)やPE(ホスファチジルエタノールアミン)等の記号を2桁で示しています。
}}
}}


<center>
{| class="wikitable" border="1" cellpadding="2" cellspacing="1" margin: 1em 1em 1em 1em"
|+ Table 2. Classification by degree of unsaturation
|- valign="top"
|align="center"| {{MapLink|ListMol|LBF..0|0: 不飽和度0<br>}}<br>[[Image:LBF--0.png|85px]]
|align="center"| {{MapLink|ListMol|LBF..1|1: 不飽和度1<br>}}<br>[[Image:LBF--1.png|140px]]
|align="center"| {{MapLink|ListMol|LBF..2|2: 不飽和度2<br>}}<br>[[Image:LBF--2.png|200px]]


|- valign="top"
|align="center"| {{MapLink|ListMol|LBF..3|3: 不飽和度3<br>}}<br>[[Image:LBF--3.png|200px]]
|align="center"| {{MapLink|ListMol|LBF..4|4: 不飽和度4<br>}}<br>[[Image:LBF--4.png|200px]]
|align="center"| {{MapLink|ListMol|LBF..5|5: 不飽和度5<br>}}<br>[[Image:LBF--5.png|200px]]


|- valign="top"
{| class="wikitable"
|align="center"| {{MapLink|ListMol|LBF..6|6: 不飽和度6<br>}}<br>[[Image:LBF--6.png|200px]]
|-
|align="center"| {{MapLink|ListMol|LBF..7|7: 不飽和度7<br>}}<br>[[Image:LBF--7.png|180px]]
! colspan="3" | Glycerolipid Overview
|align="center"| {{MapLink|ListMol|LBF..8|8: 不飽和度8<br>}}<br>[[Image:LBF--8.png|280px]]
|-
| align="center" style="vertical-align:top" width=33%|
Glycoglycerolipid<br><small>グリセロ糖脂質</small>: LBGnn
<br>[[Image:LBGnn.png]]<br>
| align="center" style="vertical-align:top" width=33%|
Phosphoglycerolipid<br><small>グリセロリン脂質</small>: LBGPn
<br>[[Image:LBGPn.png]]<br>
|}
|}
</center>
</center>
==Classification by position of n-z nomenclature <small>二重結合の位置(n-z)による分類</small>==
{{Twocolumn|
|
}}


<center>
<center>
{| class="wikitable" border="1" cellpadding="2" cellspacing="1" margin: 1em 1em 1em 1em"
{| class="wikitable" border="1" cellpadding="2" cellspacing="1" margin: 1em 1em 1em 1em"
|+ Table 3. Classification by position of n-z nomenclature
|+ Table 1. Classification by number of sugars or polar head group
 
|- valign="top"
|- valign="top"
|align="center"| {{MapLink|ListMol|LBF...00|00: n-0<br>}}<br>[[Image:LBF---00.png|80px]]
|align="center"| {{MapLink|ListMol|LBGPA|LBGPA: <br>Ptd acid <br>ホスファチジン酸<br>}}<br>[[Image:LBGPA.png|90px]]
|align="center"| {{MapLink|ListMol|LBF...01|01: n-1<br>}}<br>[[Image:LBF---01.png|100px]]
|align="center"| {{MapLink|ListMol|LBGPC|LBGPC: <br>Ptd-choline<br>ホスファチジルコリン<br>}}<br>[[Image:LBGPC.png|155px]]
|align="center"| {{MapLink|ListMol|LBF...02|02: n-2<br>}}<br>[[Image:LBF---02.png|180px]]
|align="center"| {{MapLink|ListMol|LBGPE|LBGPE: <br>Ptd-ethanolamine<br>ホスファチジルエタノールアミン<br>}}<br>[[Image:LBGPE.png|135px]]
|align="center"| {{MapLink|ListMol|LBF...03|03: n-3<br>}}<br>[[Image:LBF---03.png|180px]]
|align="center"| {{MapLink|ListMol|LBGPG|LBGPG: <br>Ptd-glycerol <br>ホスファチジルグリセロール<br>}}<br>[[Image:LBGPG.png|130px]]


|- valign="top"
|- valign="top"
|align="center"| {{MapLink|ListMol|LBF...04|04: n-4<br>}}<br>[[Image:LBF---04.png|180px]]
|align="center"| {{MapLink|ListMol|LBGPI|LBGPI: <br>Ptd-inositol<br>ホスファチジルイノシトール<br>}}<br>[[Image:LBGPI.png|110px]]
|align="center"| {{MapLink|ListMol|LBF...05|05: n-5<br>}}<br>[[Image:LBF---05.png|180px]]
|align="center"| {{MapLink|ListMol|LBGPS|LBGPS: <br>Ptd-serine<br>ホスファチジルセリン<br>}}<br>[[Image:LBGPS.png|150px]]
|align="center"| {{MapLink|ListMol|LBF...06|06: n-6<br>}}<br>[[Image:LBF---06.png|180px]]
|align="center"| {{MapLink|ListMol|LBGPx|LBGPx: <br>other <br>その他リン脂質<br>}}<br>[[Image:LBGPx.png|95px]]
|align="center"| {{MapLink|ListMol|LBF...07|07: n-7<br>}}<br>[[Image:LBF---07.png|150px]]
 
|- valign="top"
|- valign="top"
|align="center"| {{MapLink|ListMol|LBF...08|08: n-8<br>}}<br>[[Image:LBF---08.png|150px]]
|align="center"| {{MapLink|ListMol|LBGMG|LBGMG: <br>Monoacyl G<br>モノグリセリド<br>}}<br>[[Image:LBGMG.png]]
|align="center"| {{MapLink|ListMol|LBF...09|09: n-9<br>}}<br>[[Image:LBF---09.png|150px]]
|align="center"| {{MapLink|ListMol|LBGDG|LBGDG: <br>Diacyl G<br>ジグリセリド<br>}}<br>[[Image:LBGDG.png]]
|align="center"| {{MapLink|ListMol|LBF...10|10: n-10<br>}}<br>[[Image:LBF---10.png|150px]]
|align="center"| {{MapLink|ListMol|LBGTG|LBGTG: <br>Triacyl G<br>トリグリセリド<br>}}<br>[[Image:LBGTG.png]]
|align="center"| {{MapLink|ListMol|LBF...11|11: n-11<br>}}<br>[[Image:LBF---11.png|150px]]
|align="center"| {{MapLink|ListMol|LBG00|LBG00: <br>Alkyl-type G<br>含アルキル, アルケニル型<br>}}
|-
|align="center"| {{MapLink|ListMol|LBG01|LBG01: <br>1 sugar<br>糖の数1<br>}}
|align="center"| {{MapLink|ListMol|LBG02|LBG02: <br>2 sugars<br>糖の数2<br>}}
|align="center"| {{MapLink|ListMol|LBG03|LBG03: <br>3 sugars<br>糖の数3<br>}}
|align="center"| {{MapLink|ListMol|LBG04|LBG04: <br>4 sugars<br>糖の数4<br>}}


|- valign="top"
|align="center"| {{MapLink|ListMol|LBF...12|12: n-12<br>}}<br>[[Image:LBF---12.png|150px]]
|align="center"| {{MapLink|ListMol|LBF...13|13: n-13<br>}}<br>[[Image:LBF---13.png|150px]]
|align="center"| {{MapLink|ListMol|LBF...14|14: n-14<br>}}<br>[[Image:LBF---14.png|150px]]
|align="center"| {{MapLink|ListMol|LBF...15|15: n-15<br>}}<br>[[Image:LBF---15.png|150px]]
|- valign="top"
|align="center"| {{MapLink|ListMol|LBF...16|16: n-16<br>}}<br>[[Image:LBF---16.png|150px]]
|align="center"| {{MapLink|ListMol|LBF...17|17: n-17<br>}}<br>[[Image:LBF---17.png|150px]]
|align="center"| {{MapLink|ListMol|LBF...18|18: n-18<br>}}<br>[[Image:LBF---18.png|150px]]
|align="center"| {{MapLink|ListMol|LBF...22|22: n-22<br>}}<br>[[Image:LBF---22.png|180px]]
|}
|}
</center>
</center>


==={{Bilingual|その他の分類|Other Classification Charts}}===


==Classification by Structure <small>骨格による分類</small>==
* {{#volatile:ClassMatrix|Head Group v.s. Length:Unsaturation of R1 <br>(極性基 対 R1の脂肪酸長:不飽和度)|LBG.....:.........:.........|10|12|4|5|Head_Group|Fatty_Acid_Length(R1)}}
{{Twocolumn|
* {{#volatile:ClassMatrix|Head Group v.s. Length:Unsaturation of R2 <br>(極性基 対 R2の脂肪酸長:不飽和度)|LBG.....:.........:.........|20|22|4|5|Head_Group|Fatty_Acid_Length(R2)}}
 
* {{#volatile:ClassMatrix|Length:Unsaturation of R1 v.s. Length:Unsaturation of R2 <br>(R2の脂肪酸長:不飽和度 対 R2の脂肪酸長:不飽和度)|LBG.....:.........:.........|10|12|20|22|Fatty_Acid_Length(R1)|Fatty_Acid_Length(R2)}}
|
 
}}


=={{Bilingual|ID番号の設計|Design of Glycerolipid Identifiers}}==
<center>
<center>
{| class="wikitable" border="1" cellpadding="2" cellspacing="1" margin: 1em 1em 1em 1em"
28-DIGIT(8+9+9+2)
|+ Table 4. Classification by Structure
<table border=1>
|- valign="top"
<tr>
|align="center"| {{MapLink|ListMol|LBF.....SC|SC: straight chain<br>}}<br><br>[[Image:LBF-----SC.png|110px]]
<td style="background-color:yellowgreen;" width=15px align="center"><big>L</big>
|align="center"| {{MapLink|ListMol|LBF.....BC|BC: branched chain<br>}}<br>[[Image:LBF-----BC.png|110px]]
<td style="background-color:yellowgreen;" width=15px align="center"><big>B</big>
|align="center"| {{MapLink|ListMol|LBF.....HP|HP: hydroperoxy<br>}}<br>[[Image:LBF-----HP.png|130px]]
<td style="background-color:darkseagreen;" width=15px align="center"><big>G</big>
|align="center"| {{MapLink|ListMol|LBF.....HO|HO: hydroxy or<br>fatty alcohol<br>}}<br>[[Image:LBF-----HO.png|110px]]
<td style="background-color:Blue; color:white" width=15px align="center"><big>''a''</big>
|align="center"| {{MapLink|ListMol|LBF.....OX|OX: oxo<br>}} <br><br>[[Image:LBF-----OX.png|110px]]
<td style="background-color:Blue; color:white" width=15px align="center"><big>''a''</big>
 
<td style="background-color:aqua" width=15px align="center"><big>''b1''</big>
|- valign="top"
<td style="background-color:aqua" width=15px align="center"><big>''b2''</big>
|align="center"| {{MapLink|ListMol|LBF.....EO|EO: epoxy<br>}}<br><br>[[Image:LBF-----EO.png|135px]]
<td style="background-color:aqua" width=15px align="center"><big>''b3''</big>
|align="center"| {{MapLink|ListMol|LBF.....MO|MO: methoxy<br>}}<br>[[Image:LBF-----MO.png|120px]]
<td style="background-color:gray;" width=15px align="center"><big>:</big>
|align="center"| {{MapLink|ListMol|LBF.....CA|CA: carboxylic<br>}}<br><br>[[Image:LBF-----CA.png|125px]]
<td style="background-color:tomato; color:white" width=15px align="center"><big>''x1''</big>
|align="center"| {{MapLink|ListMol|LBF.....AL|AL: aldehyde<br>}}<br><br>[[Image:LBF-----AL.png|115px]]
<td style="background-color:tomato; color:white" width=15px align="center"><big>''x1''</big>
|align="center"| {{MapLink|ListMol|LBF.....KT|KT: ketone<br>}}<br><br>[[Image:LBF-----KT.png|115px]]
<td style="background-color:purple; color:white" width=15px align="center"><big>''y1''</big>
 
<td style="background-color:firebrick; color:white" width=15px align="center"><big>''z1''</big>
|- valign="top"
<td style="background-color:firebrick; color:white" width=15px align="center"><big>''z1''</big>
|align="center"| {{MapLink|ListMol|LBF.....ES|ES: ester<br>}}<br><br>[[Image:LBF-----ES.png|140px]]
<td style="background-color:green; color:white" width=15px align="center"><big>''w1''</big>
|align="center"| {{MapLink|ListMol|LBF.....ET|ET: ether<br>}}<br><br>[[Image:LBF-----ET.png|120px]]
<td style="background-color:green; color:white" width=15px align="center"><big>''w1''</big>
|align="center"| {{MapLink|ListMol|LBF.....SF|SF: sulfur<br>containing<br>}}<br>[[Image:LBF-----SF.png|120px]]
<td style="background-color:white;" width=15px align="center"><big>''c1''</big>
|align="center"| {{MapLink|ListMol|LBF.....PH|PH: phosphate<br>}}<br><br>[[Image:LBF-----PH.png|130px]]
<td style="background-color:white;" width=15px align="center"><big>''c1''</big>
|align="center"| {{MapLink|ListMol|LBF.....AN|AN: nitrogen containing<br>}}<br>[[Image:LBF-----AN.png|115px]]
<td style="background-color:gray;" width=15px align="center"><big>:</big>
 
<td style="background-color:tomato; color:white" width=15px align="center"><big>''x2''</big>
|- valign="top"
<td style="background-color:tomato; color:white" width=15px align="center"><big>''x2''</big>
|align="center"| {{MapLink|ListMol|LBF.....AM|AM: amide<br>}}<br><br>[[Image:LBF-----AM.png|140px]]
<td style="background-color:purple; color:white" width=15px align="center"><big>''y2''</big>
|align="center"| {{MapLink|ListMol|LBF.....OP|OP: 12-oxo<br>-phytodienoic acid <br>}}<br>[[Image:LBF-----OP.png|120px]]
<td style="background-color:firebrick; color:white" width=15px align="center"><big>''z2''</big>
|align="center"| {{MapLink|ListMol|LBF.....JA|JA: jasmonic<br>acid related<br>}}<br>[[Image:LBF-----JA.png|130px]]
<td style="background-color:firebrick; color:white" width=15px align="center"><big>''z2''</big>
|align="center"| {{MapLink|ListMol|LBF.....PG|PG: prostaglandin<br>}}<br>[[Image:LBF-----PG.png|140px]]
<td style="background-color:green; color:white" width=15px align="center"><big>''w2''</big>
|align="center"| {{MapLink|ListMol|LBF.....LT|LT: leucotriene<br>}}<br><br>[[Image:LBF-----LT.png|135px]]
<td style="background-color:green; color:white" width=15px align="center"><big>''w2''</big>
 
<td style="background-color:white;" width=15px align="center"><big>''c2''</big>
|- valign="top"
<td style="background-color:white;" width=15px align="center"><big>''c2''</big>
|align="center"| {{MapLink|ListMol|LBF.....TX|TX: thromboxane<br>}}<br>[[Image:LBF-----TX.png|140px]]
<td> (R3 if exists) </td>
|align="center"| {{MapLink|ListMol|LBF.....LX|LX: lipoxin<br>}}<br>[[Image:LBF-----LX.png|130px]]
</tr>
|align="center"| {{MapLink|ListMol|LBF.....HX|HX: hepoxilin<br>}}<br>[[Image:LBF-----HX.png|120px]]
</table>
|align="center"| {{MapLink|ListMol|LBF.....LG|LG: levugladin<br>}}<br>[[Image:LBF-----LG.png|140px]]
</center>
|align="center"| {{MapLink|ListMol|LBF.....CV|CV: clavulone<br>}}<br>[[Image:LBF-----CV.png|130px]]
 
|- valign="top"
|align="center"| {{MapLink|ListMol|LBF.....XX|XX: others<br>}}<br>[[Image:LBF-----XX.png|130px]]
|align="center"|
|align="center"|
|align="center"|
|align="center"|
|}
 
==Classification by Structure <small>骨格による分類</small>==
{{Twocolumn|
{{Twocolumn|
* ''a'' ... the number of attached sugars (glycoglycerolipid) or the code of polar head group(phosphoglycerolipid)
* ''b'' ... type of binding to fatty acid-1 through 3


* ''x'' ... carbon chain length (fatty acid-1 through 3)
* ''y'' ... degree of unsaturation (fatty acid-1 through 3)
* ''z'' ... position of n-''z'' (n minus z; also ω-z or omega-z) nomenclature (fatty acid-1 through 3)
* ''w'' ... structure type (fatty acid-1 through 3)
* ''c'' ... serial number (fatty acid-1 through 3)
|
|
* ''a'' ... 修飾する糖の個数 (グリセロ糖脂質) もしくは極性基を示す略号 (グリセロリン脂質)
* ''b'' ... 脂肪酸1および2の結合のタイプ


* ''x'' ... 炭素鎖長 (脂肪酸1から3)
* ''y'' ... 不飽和度 (脂肪酸1から3)
* ''z'' ... n-''z'' (またはω-zやomega-z) における数 (脂肪酸1から3)
* ''w'' ... 骨格のタイプ (脂肪酸1から3)
* ''c'' ... 通し番号 (脂肪酸1から3)
}}
}}


{| class="wikitable" border="1" cellpadding="2" cellspacing="1" margin: 1em 1em 1em 1em"
---->
|+ Table 1. Classification of Glycerolipid [[Image:LBS.png|120px]]
|- valign="top"
|align="center"|Glycolipid<br/>(incl. phospho)<br/>[[Volatile:ListMol|LBG##***--|LBG##***--: ]]<br/>?
|align="center"|Phospholipid<br/> [[Volatile:ListMol|LBGP****##|LBGP****##:]]<br/>?
|align="center"|Others<br/> [[Volatile:ListMol|LBG*******|LBS*******:]]<br/>?
|}
</center>

Latest revision as of 01:05, 30 November 2023

Glycerolipid


Upper classes: LB

Class Overview

Complex lipid is the major structural component of biological membranes (lipid bilayer), and is broadly classified into glycerolipid containing glycerol and sphingolipid containing sphingoid. The glycerolipid category (LBG) includes glycoglycerolipid and phosphoglycerolipid.

リン酸や糖などを含む脂質は複合脂質と呼ばれ、細胞膜の脂質二重層の主要な構成要素です。複合脂質は、一般的にグリセロールを含む脂質 (グリセロ脂質) とスフィンゴイドを含む脂質 (スフィンゴ脂質) に大別されます。グリセロ脂質 (LBG) には、グリセロ糖脂質 (glycoglycerolipid) とグリセロリン脂質 (glycerophospholipid) が含まれます。

Common Nomenclature

LipidMaps Consortium in the US defines the standard way of structure description (nomenclature). Please follow this standard especially when exact structure is not determined due to experimental procedures.

米国のLipidMaps コンソーシアムでは、構造の標準的な表記法を定めています(命名系)。とりわけ分析法により構造に曖昧な部分が残る場合は、以下の表記法を踏襲してください。

Reference: "Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures" J Lipid Res 61(12), 1539-1555, 2020

GlyceroLipid

Glycerolipid is referred to as mono-, di-, and triglycerides depending on the number of acyl chains (fatty acids). When sugars are attached, the modification comes before the backbone name; SQ, MG, and DG indicate Sulfoquinovose, single hexose, and double hexoses, respectively.Hexose is commonly galactose, and MG and DG may refer to mono- and digalactose.

配位するアシル基(脂肪酸)の数により、モノ・ジ・トリアシルグリセロール(それぞれ MG, DG, TG)と呼ばれます。グリセロール骨格に糖鎖が付く場合は MG や DG の前に SQ (Sulfoquinovosyl)、MG (Monoglycosyl)、DG (Diglycosyl) をつけます。MGやDGの略称はガラクトースの意味で使われる場合もあります。

Monoglycosyl (単糖) Diglycosyl (二糖) Sulfoquinovosyl (スルホキノボース)
MG : Monoacylglycerol
(モノアシルグリセロール)
MGMG DGMG SQMG
DG : Diacylglycerol
(ジアシルグリセロール)
MGDG DGDG SQDG
TG : Triacylglycerol
(トリアシルグリセロール)
n.a. (該当なし)

Glycerophospholipid

Template:Twocolmn

Phosphatidic acid
ホスファチジン酸
PA, Ptd
Phosphatidylcholine
ホスファチジルコリン
PC, PtdCho
Phosphatidylethanolamine
ホスファチジルエタノールアミン
PE, PtdEtn
Phosphatidylserine
ホスファチジルセリン
PS, PtdSer
Phosphatidylinositol
ホスファチジルイノシトール
PI, PtdIns
Phosphatidylinositol-mannoside
ホスファチジルイノシトールマンノシド
PIM
Phosphatidylglycerol
ホスファチジルグリセロール
PG, PtdGro
Phosphatidylglycerolphosphate
ホスファチジルグリセロールリン酸
PGP
Cardiolipin
カルジオリピン
CL, Ptd2Gro
Bis[monoacylglycero]phosphates
ビス(モノアシルグリセロ)リン酸
BMP


Subcategories

This category has only the following subcategory.