Category:LBS: Difference between revisions
mNo edit summary |
mNo edit summary |
||
Line 63: | Line 63: | ||
<td style="background-color:yellowgreen;" width=15px align="center"><big>B</big> | <td style="background-color:yellowgreen;" width=15px align="center"><big>B</big> | ||
<td style="background-color:darkseagreen;" width=15px align="center"><big>S</big> | <td style="background-color:darkseagreen;" width=15px align="center"><big>S</big> | ||
<td style="background-color:firebrick;" width=15px align="center"><big>'' | <td style="background-color:firebrick;" width=15px align="center"><big>''V/I''</big> | ||
<td style="background-color:Blue; color:white" width=15px align="center"><big>''s1''</big> | <td style="background-color:Blue; color:white" width=15px align="center"><big>''s1''</big> | ||
<td style="background-color:Blue; color:white" width=15px align="center"><big>''s2''</big> | <td style="background-color:Blue; color:white" width=15px align="center"><big>''s2''</big> | ||
Line 76: | Line 76: | ||
</center> | </center> | ||
{{Twocolumn| | {{Twocolumn| | ||
* ''' | * '''V''' for vertebrates and '''I''' for invertebrates | ||
* '''s1 ∼ s3''' ... Structure code | * '''s1 ∼ s3''' ... Structure code | ||
: The 1<sup>st</sup> letter '''s1''': | : The 1<sup>st</sup> letter '''s1''': | ||
Line 90: | Line 90: | ||
* '''c1, c2''' ... serial numbers | * '''c1, c2''' ... serial numbers | ||
| | | | ||
* '''x''' ... 脊椎動物は ''' | * '''x''' ... 脊椎動物は '''V''' 無脊椎動物は '''I''' | ||
* '''s1 ∼ s3''' ... 構造コード | * '''s1 ∼ s3''' ... 構造コード | ||
: 最初の文字 '''s1''': | : 最初の文字 '''s1''': | ||
Line 114: | Line 114: | ||
|- | |- | ||
| '''0''' || no sugar | | '''0''' || no sugar | ||
| '''A''' || other <span style="color:gold"> | | '''A''' || other Galactose (<span style="color:gold"><b>Gal</b></span>)<br/> including methylation | ||
| '''L''' || Rhamnose (<b>Rha</b>) or pentose sugars (<b>Ara, Xyl</b>) | | '''L''' || Rhamnose (<b>Rha</b>) or pentose sugars (<b>Ara, Xyl</b>) | ||
|- | |- | ||
| '''1''' || {{LBS/FormatSugar|Gala1-3}} | | '''1''' || {{LBS/FormatSugar|Gala1-3}} | ||
| '''B''' || Other ''N''-acetyl <span style="color:gold"> | | '''B''' || Other ''N''-acetyl galactosamine (<span style="color:gold"><b>GalNAc</b></span>) or <br/> glucosamine (<span style="color:blue"><b>GlcNAc</b></span>) | ||
| '''M''' || <span style="color:green">Mannose (<b>Man</b>)</span> | | '''M''' || <span style="color:green">Mannose (<b>Man</b>)</span> | ||
|- | |- | ||
| '''2''' || {{LBS/FormatSugar|Gala1-4}} | | '''2''' || {{LBS/FormatSugar|Gala1-4}} | ||
| '''C''' || <span style="color:gold"> | | '''C''' || Galactosamine (<span style="color:gold"><b>GalN</b></span>) or<br/> Glucosamine (<span style="color:blue"><b>GlcN</b></span>) | ||
| '''N''' || <span style="color:pink">Neuraminic acids (<b>NeuAc, NeuGc, NeuNH, KDN</b>)</span> | | '''N''' || <span style="color:pink">Neuraminic acids (<b>NeuAc, NeuGc, NeuNH, KDN</b>)</span> | ||
|- | |- | ||
Line 138: | Line 138: | ||
|- | |- | ||
| '''6''' || {{LBS/FormatSugar|Galb1-6}} | | '''6''' || {{LBS/FormatSugar|Galb1-6}} | ||
| '''G''' || Other <span style="color:blue"> | | '''G''' || Other Glucose (<span style="color:blue"><b>Glc</b></span>) | ||
| || | | || | ||
|- | |- | ||
| '''7''' || {{LBS/FormatSugar|GalNAcb1-3}} | | '''7''' || {{LBS/FormatSugar|GalNAcb1-3}} | ||
| '''H''' || <span style="color:blue"> | | '''H''' || Glucuronic acid (<span style="color:blue"><b>GlcA</b></span>) | ||
| || | | || | ||
|- | |- | ||
Line 180: | Line 180: | ||
|+ Table 1. Classification by the Number of Sugars | |+ Table 1. Classification by the Number of Sugars | ||
|- valign="top" | |- valign="top" | ||
|align="center" width=25%| {{MapLink|ListMol|LBS01| | |align="center" width=25%| {{MapLink|ListMol|LBS01|LBS....01: <br>1 sugar<br>糖の数1<br>}} | ||
|align="center" width=25%| {{MapLink|ListMol|LBS02| | |align="center" width=25%| {{MapLink|ListMol|LBS02|LBS....02: <br>2 sugars<br>糖の数2<br>}} | ||
|align="center" width=25%| {{MapLink|ListMol|LBS03| | |align="center" width=25%| {{MapLink|ListMol|LBS03|LBS....03: <br>3 sugars<br>糖の数3<br>}} | ||
|align="center" width=25%| {{MapLink|ListMol|LBS04| | |align="center" width=25%| {{MapLink|ListMol|LBS04|LBS....04: <br>4 sugars<br>糖の数4<br>}} | ||
|- valign="top" | |- valign="top" | ||
|align="center"| {{MapLink|ListMol|LBS05| | |align="center"| {{MapLink|ListMol|LBS05|LBS....05: <br>5 sugars<br>糖の数5<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS06| | |align="center"| {{MapLink|ListMol|LBS06|LBS....06: <br>6 sugars<br>糖の数6<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS07| | |align="center"| {{MapLink|ListMol|LBS07|LBS....07: <br>7 sugars<br>糖の数7<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS08| | |align="center"| {{MapLink|ListMol|LBS08|LBS....08: <br>8 sugars<br>糖の数8<br>}} | ||
|- valign="top" | |- valign="top" | ||
|align="center"| {{MapLink|ListMol|LBS09| | |align="center"| {{MapLink|ListMol|LBS09|LBS....09: <br>9 sugars<br>糖の数9<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS10| | |align="center"| {{MapLink|ListMol|LBS10|LBS....10: <br>10 sugars<br>糖の数10<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS11| | |align="center"| {{MapLink|ListMol|LBS11|LBS....11: <br>11 sugars<br>糖の数11<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS12| | |align="center"| {{MapLink|ListMol|LBS12|LBS....12: <br>12 sugars<br>糖の数12<br>}} | ||
|- valign="top" | |- valign="top" | ||
|align="center"| {{MapLink|ListMol|LBS13| | |align="center"| {{MapLink|ListMol|LBS13|LBS....13: <br>13 sugars<br>糖の数13<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS14| | |align="center"| {{MapLink|ListMol|LBS14|LBS....14: <br>14 sugars<br>糖の数14<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS15| | |align="center"| {{MapLink|ListMol|LBS15|LBS....15: <br>15 sugars<br>糖の数15<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS16| | |align="center"| {{MapLink|ListMol|LBS16|LBS....16: <br>16 sugars<br>糖の数16<br>}} | ||
|- valign="top" | |- valign="top" | ||
|align="center"| {{MapLink|ListMol|LBS17| | |align="center"| {{MapLink|ListMol|LBS17|LBS....17: <br>17 sugars<br>糖の数17<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS18| | |align="center"| {{MapLink|ListMol|LBS18|LBS....18: <br>18 sugars<br>糖の数18<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS19| | |align="center"| {{MapLink|ListMol|LBS19|LBS....19: <br>19 sugars<br>糖の数19<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS20| | |align="center"| {{MapLink|ListMol|LBS20|LBS....20: <br>20 sugars<br>糖の数20<br>}} | ||
|- valign="top" | |- valign="top" | ||
|align="center"| {{MapLink|ListMol|LBS21| | |align="center"| {{MapLink|ListMol|LBS21|LBS....21: <br>21 sugars<br>糖の数21<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS22| | |align="center"| {{MapLink|ListMol|LBS22|LBS....22: <br>22 sugars<br>糖の数22<br>}} | ||
|align="center"| {{MapLink|ListMol|LBS00| | |align="center"| {{MapLink|ListMol|LBS00|LBS....00: <br>0 sugar<br>糖の数0<br>}} | ||
|align="center"| {{MapLink|ListMol|LBSPP| | |align="center"| {{MapLink|ListMol|LBSPP|LBS....PP: <br>Sphingophospholipid<br>スフィンゴリン脂質<br>}} | ||
|} | |} | ||
</center> | </center> | ||
Line 224: | Line 224: | ||
|- | |- | ||
! style="background:#efefef; text-align:center;" colspan="4"| | ! style="background:#efefef; text-align:center;" colspan="4"| | ||
Glycosphingolipids (Abbr. | Glycosphingolipids (Abbr. Z = {{LBS/FormatSugar|Galb1-4Glcb1-Cer}}) | ||
|- valign="top" | |- valign="top" | ||
| <big>'''Ganglio''' [Gg] (??)</big><br/> GalNAcβ1-4R | | <big>'''Ganglio''' [Gg] (??)</big><br/> GalNAcβ1-4R |
Revision as of 00:59, 19 March 2011
Sphingolipid
Class Overview
Sphingosine & Ceramide
Sphingosine is synthesized from decarboxylating condensation of palmitoyl CoA with serine. It is a 18-carbon amino alcohol (16 carbons from palmitic acid and 2 from serine) with one unsaturated bond (2-amino-4-octadecene-1,3-diol). Sphingosine is further acylated to form ceramide, an important component of cell membranes.
|
スフィンゴシンはパルミトイルCoAがアミノ酸セリンと脱炭酸縮合して生成します。炭素を18個含むアミノアルコール(16個がパルミチン酸、2個がセリン由来)で不飽和結合を1つ含んでいます (2-amino-4-octadecene-1,3-diol)。
スフィンゴシンがアシル化したものが、細胞膜の重要な成分であるセラミドです。
|
Abbreviations
Design of Page Titles for Sphingolipid
L | B | S | V/I | s1 | s2 | s3 | n1 | n2 | y | c1 | c2 |
|
|
Sugar Code
"I" and "O" are not used to avoid confusion with "1" or "0".
code | sugar | code | sugar | code | sugar |
---|---|---|---|---|---|
0 | no sugar | A | other Galactose (Gal) including methylation |
L | Rhamnose (Rha) or pentose sugars (Ara, Xyl) |
1 | Galα1-3 | B | Other N-acetyl galactosamine (GalNAc) or glucosamine (GlcNAc) |
M | Mannose (Man) |
2 | Galα1-4 | C | Galactosamine (GalN) or Glucosamine (GlcN) |
N | Neuraminic acids (NeuAc, NeuGc, NeuNH, KDN) |
3 | Galα1-6 | D | GlcNAcβ1-3 | P | phosphocholine (PC), phosphate (HPO3), sulphate (HSO3), and ethylene (2C=CH) |
4 | Galβ1-3 | E | GlcNAcβ1-4 | Q | Aminoethylphosphate (AEPn, MAEPr, EtnP) |
5 | Galβ1-4 | F | GlcNAcβ1-6 | ||
6 | Galβ1-6 | G | Other Glucose (Glc) | ||
7 | GalNAcβ1-3 | H | Glucuronic acid (GlcA) | ||
8 | GalNAcβ1-4 | J | Inositol (Ins) | Y | GlcNAcβ1-3Manβ1-4Glcβ1-1Cer |
9 | GalNAcβ1-6 | K | Fucose (Fuc) | Z | Galβ1-4Glcβ1-1bCer |
Classification
By the Number of Sugars 糖の個数
For glycosphingolipid, 2 digits following LBS stand for the number of attached sugars. For phosphosphingolipid, the code of phosphorylation, PP. |
スフィンゴ糖脂質は結合している糖の総数をLBSに続く2桁の数字で、スフィンゴリン脂質は数字の代わりにリン酸化修飾を示す記号PPで分類しています。 |
Sphingolipid Overview | ||
---|---|---|
(0 pages) | (0 pages) | (0 pages) | (0 pages) |
(0 pages) | (0 pages) | (0 pages) | (0 pages) |
(0 pages) | (0 pages) | (0 pages) | (0 pages) |
(0 pages) | (0 pages) | (0 pages) | (0 pages) |
(0 pages) | (0 pages) | (0 pages) | (0 pages) |
(0 pages) | (0 pages) | (0 pages) | (0 pages) |
Polysaccharide Chain
Glycosphingolipids (Abbr. Z = Galβ1-4Glcβ1-Cer) | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Ganglio [Gg] (??) GalNAcβ1-4R |
Lacto [Lc] (??) GlcNAcβ1-3R |
Globo [Gb] (??) Galα1-4R |
Root [R] (??) derivatives of R | ||||||||||||||
|
|
|
| ||||||||||||||
Isoganglio [IG] (??) GalNAcβ1-3R |
Lacto with β1-6 [L6] (??) GlcNAcβ1-6R |
Isoglobo [IB] (??) Galα1-3R | |||||||||||||||
Lactoganglio [LG]
|
Isogloboganglio [BG]
|
Glycosphingolipids without ROOT | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Glc-Cer (??) Glcβ1-Cer |
Gal-Cer (??) Galβ1-Cer | |||||||||||
|
| |||||||||||
Phospho (??) Ino-P-Cer |
Others (??) | |||||||||||
|
|